Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g09872 ATGAAGACGGAAAACCGATCCAAAGAAGAAATTGCAACTTATCAAGAATGGTTCAATTTAGCAGATTCAGATGGAGATGGACGCGTAAGTGGAAACGAAGCTACAAAGTTCTTCGCACTCTCAAACTTATCTCGTTCTCAACTCAAGCAGCTTTGGGCTCTTTCCGATACCAAACGACAAGGATTTTTAGGTTTCTCAGAGTTCCTTACTGCGATGCAGTTGGTTTCGCTTGCGCAAGCAGGATATGAACTTAATTCTGATTTACTAAAGATTCAATTGGATAAGGAAAATGTTAAACCACCTGTGATTGAAGGATTGGATACTTTAGTGGCGGAAACTAAGAGTTTGATGACAATAACTGCTCTTTCCGAAGTGAATGTAGTGACTGCCCAGCCTCAACCATTTTTATCTAACTCATGGTTCACTTCAAAATCAAGATCTTCAAAGAAATTACCTCCCAATGCAGTTACATCAATAGTTGATGGCTTGAAGAGAATGTATATTGAAAGACTAAAGCCCTTGGAAGCTGCTTATAGATATAATGATTTTGTATCTCCGTTGTTGACCAACAGTGATTTTGATGCTAAACCCATGGTCATGCTTCTTGGGCAATACTCCACGGGGAAAACAACATTTATAAAACATTTGTTAAAATGTGATTATCCAGGAGCACACATTGGACCAGAGCCTACAACAGATAGATTTGTTGTTGTCATGTCCGGCCCTGACGAGAGGAGTGTTCCTGGAAACACTATTGCTGTTGATGCTGACATGCCTTTTGGTGGCCTGACAACTTTTGGAGGTTCATTTTTGTCGAAGTTCCAATGCTCTCAAATGCCACATCCACTGCTGGATGAAATAACAATTGTGGACACTCCGGGTGTCCTATCCGGAGAGAAACAAAGGACACAAAGAAGCTATGATTTCACAGGTGTTGTATCTTGGTTTGCTGCCAAATGCGATGTCATTCTTCTTCTATTTGATCCGCATAAACTTGACATCAGTGATGAGTTCAAACGTGTAATTTCTTCATTACGTGGCAATGAGGACAAGATACGTGTGGTTTTGAATAAGTCAGACCAGGTTGATACTCAACAACTTATGAGAGTTTACGGAGCGTTGATGTGGTCGTTAGGGAAGGTTCTGACTACTCCCGAAGTTCCACGTGTATACATCGGGTCGTTTAATGATAAAGCTACATGTGAAGGATTTGTTGGTCCACTAGGAAAAAATCTCTTTGAGAAGGAACAAAACGATCTGTTGGCAGATTTGCTCGATATCCCAAAGAAGGCTTGTGATCTTAGGATCAATGAATTTGTGAAACGAGCTAGATCGGCCAAAGTTCATGCATACATAATTAGCCATCTTAAAAAAGAGATGCCAGCAATAATGGGCAAATCCAAGGCTCAACAAAAACTTATTGATAATCTTGATAATGAATTTGCAAAGGTTCAAAGGGAGTACCATCTACCAGCGGGTGACTTTCCTAGTGTTGAACACTTCAAAGAAATTTTGAGTAGTTATAGCATAGACAAATTTGAGAAACTAAAGCCAAAAATGATCCAGGCCATAGATGACATGCTTGGATATGAAATCCCAGAGCTTCTAAAGAAATTCAGAAATCCTTATGATTAA 1635 0.3969 MKTENRSKEEIATYQEWFNLADSDGDGRVSGNEATKFFALSNLSRSQLKQLWALSDTKRQGFLGFSEFLTAMQLVSLAQAGYELNSDLLKIQLDKENVKPPVIEGLDTLVAETKSLMTITALSEVNVVTAQPQPFLSNSWFTSKSRSSKKLPPNAVTSIVDGLKRMYIERLKPLEAAYRYNDFVSPLLTNSDFDAKPMVMLLGQYSTGKTTFIKHLLKCDYPGAHIGPEPTTDRFVVVMSGPDERSVPGNTIAVDADMPFGGLTTFGGSFLSKFQCSQMPHPLLDEITIVDTPGVLSGEKQRTQRSYDFTGVVSWFAAKCDVILLLFDPHKLDISDEFKRVISSLRGNEDKIRVVLNKSDQVDTQQLMRVYGALMWSLGKVLTTPEVPRVYIGSFNDKATCEGFVGPLGKNLFEKEQNDLLADLLDIPKKACDLRINEFVKRARSAKVHAYIISHLKKEMPAIMGKSKAQQKLIDNLDNEFAKVQREYHLPAGDFPSVEHFKEILSSYSIDKFEKLKPKMIQAIDDMLGYEIPELLKKFRNPYD 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g09872 544 Gene3D - 199 427 IPR027417 -
Vifa1g09872 544 Coils Coil 467 487 - -
Vifa1g09872 544 CDD EH 14 80 IPR000261 GO:0005515
Vifa1g09872 544 ProSiteProfiles EH domain profile. 10 81 IPR000261 GO:0005515
Vifa1g09872 544 FunFam EH domain-containing protein 1 199 427 - -
Vifa1g09872 544 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 186 464 IPR027417 -
Vifa1g09872 544 SUPERFAMILY EF-hand 7 90 IPR011992 -
Vifa1g09872 544 Pfam Cytoskeletal-regulatory complex EF hand 8 75 IPR000261 GO:0005515
Vifa1g09872 544 Pfam Domain of unknown function (DUF5600) 435 535 IPR040990 -
Vifa1g09872 544 Gene3D - 163 535 - -
Vifa1g09872 544 SMART eh_3 7 94 IPR000261 GO:0005515
Vifa1g09872 544 SMART efh_1 13 41 IPR002048 GO:0005509
Vifa1g09872 544 SMART efh_1 47 75 IPR002048 GO:0005509
Vifa1g09872 544 ProSiteProfiles EF-hand calcium-binding domain profile. 9 44 IPR002048 GO:0005509
Vifa1g09872 544 PANTHER EH DOMAIN 9 541 - -
Vifa1g09872 544 Gene3D - 4 103 - -
Vifa1g09872 544 ProSiteProfiles Dynamin-type guanine nucleotide-binding (G) domain profile. 193 429 IPR030381 GO:0005525
Vifa1g09872 544 CDD EHD 198 442 - -
Vifa1g09872 544 Pfam N-terminal EH-domain containing protein 162 194 IPR031692 -
Vifa1g09872 544 ProSiteProfiles EF-hand calcium-binding domain profile. 46 78 IPR002048 GO:0005509
Vifa1g09872 544 Pfam Dynamin family 199 358 IPR045063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g09872 Vifa-Chr1 1609476913 1609481032 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g09872 8 544 EF-hand Containing Proteins AT4G05520 76.350 0.0 865
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g09872 K12483 - gmx:100809091 932.554
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g09872 1 1609476913 1609481032 Vifa1g09872 1 1609476913 1609481032 ECH
Vifa4g05039 4 1579212392 1579217191 Vifa1g09872 1 1609476913 1609481032 PCT