Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g04813 ATGGCAAATTCTTACAACACCATCATCCTTCTCATTTCATTCCTCTCATTTTCCTTCCTCTCCATTTCCATCTCAGGTGAAGCTCCATTCGTCGGCGTCAACATTGGAACCGACGTTGAAAACATGCCATCAACTTCCCACATAGTTTCATTTCTTCAGTTACAACAAATAACACACGTTCGTCTCTACGATGCAAACCCCGACATTCTTAAATCCTTGTCCGGAACCAAAATTCGTGTCATCATCAGTGTCCCTAACAACCAGCTTCTCGCTATTGGTTCTTCCAACACCACCGCAGCTTCATGGATCCAACGCAACGTCGTCGCTTATTACCCTCAAACATTAATCACCGGAATCTCCGTCGGTGACGAGGTTCTTACCACTGTTGGTTCTTCCGCTCCTCTTCTTCTTCCTGCTATGGAGTCTCTTTACAATGCTCTTGTTTCTTCGAATCTTGATCAACTAATTAAAGTCTCTACTCCTCACGCTGCTTCCATTATTCTTGACCCGTTTCCACCTTCTCAGGCTTTTTTCAACCAAACCCTTGTTGATGTTCTTCTACCCATTCTGCAGTTTCTTTCCAAGACGGAATCTCCTTTGATGATGAATCTTTATCCTTATTATGTTTTCATGCAGAGTAAAGGCGTTGTTCCTTTGGATAACGCGCTTTTTAAACCGGTTACTCCTAATAAGGAAATGGTGGATCCTAATACTTTGCTTCATTATACTAATGTGCTTGATGCCATGATTGATTCCGCTTATTTTTCTATGAAGAATCTTAATGTTACTGATGTTGTTGTTCTTGTTACTGAAACTGGTTGGCCTAGTATGGCTGATTCTAAAGAGCCTTATGCTACCAAAGATAATGCGGATACTTATAATTCGAATTTGATTAAGCATGTTTTTGATCACAGCGGGACTCCTTTGCATCCTGAAGCTACTTCTAATGTTTTTATATATGAGCTTTTTAACGAGGATTTGAGGTCTCCGCCGGTTTCTGAGGCGAATTGGGGTCTTTTTTATGGGAACACCACTGCTGTTTATTTGCTTCATGTGTCTGGAATTGGGACTTTTTTGGCGAATGATACGACGAATCAGACCTACTGCATTGCTATGGATGGTTTTGATTCCAAGACGCTGCAGGCTGCGTTGGATTGGGCGTGTGGACCGGGAAGGGCTAATTGTTCGGAGATTCAGCCTGGTGAGAGTTGCTATAAACCTAACAATGTTAAGAATCACGCCTCTTATGCTTTTGATAGCTATTACCAGAAAGAAGGCAAGTCTCCGGGGAGCTGTGATTTCAAAGGAGTTGCTATGATCACTACCACAGATCCCAGTCACGGGAGCTGTGAATTTCCTGGAAGCAAGAACATAAGCAACAAGACAAAGGAAGTGGTGAATTCAACTCAATTAAGCAATGCAGGAGAGAAGTTAAGGTTCAGAACCATGAACAGCATCAAAATAAAGACAATTAACAACATTTTGCACATTCTCTTAACATGTCTCCCTGCTTTGTTGTTAGTCCTTTTATGA 1533 0.4175 MANSYNTIILLISFLSFSFLSISISGEAPFVGVNIGTDVENMPSTSHIVSFLQLQQITHVRLYDANPDILKSLSGTKIRVIISVPNNQLLAIGSSNTTAASWIQRNVVAYYPQTLITGISVGDEVLTTVGSSAPLLLPAMESLYNALVSSNLDQLIKVSTPHAASIILDPFPPSQAFFNQTLVDVLLPILQFLSKTESPLMMNLYPYYVFMQSKGVVPLDNALFKPVTPNKEMVDPNTLLHYTNVLDAMIDSAYFSMKNLNVTDVVVLVTETGWPSMADSKEPYATKDNADTYNSNLIKHVFDHSGTPLHPEATSNVFIYELFNEDLRSPPVSEANWGLFYGNTTAVYLLHVSGIGTFLANDTTNQTYCIAMDGFDSKTLQAALDWACGPGRANCSEIQPGESCYKPNNVKNHASYAFDSYYQKEGKSPGSCDFKGVAMITTTDPSHGSCEFPGSKNISNKTKEVVNSTQLSNAGEKLRFRTMNSIKIKTINNILHILLTCLPALLLVLL 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g04813 510 Gene3D - 361 484 - -
Vifa4g04813 510 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE BG1-RELATED-RELATED 19 441 IPR044965 GO:0004553|GO:0005975
Vifa4g04813 510 Gene3D Glycosidases 30 355 - -
Vifa4g04813 510 Pfam Glycosyl hydrolases family 17 31 350 IPR000490 GO:0004553|GO:0005975
Vifa4g04813 510 FunFam Glucan endo-1,3-beta-glucosidase 3 30 355 - -
Vifa4g04813 510 ProSitePatterns Glycosyl hydrolases family 17 signature. 265 278 IPR000490 GO:0004553|GO:0005975
Vifa4g04813 510 SUPERFAMILY (Trans)glycosidases 31 350 IPR017853 -
Vifa4g04813 510 Pfam X8 domain 368 439 IPR012946 -
Vifa4g04813 510 FunFam Glucan endo-1,3-beta-glucosidase 1 361 477 - -
Vifa4g04813 510 SMART X8_cls 367 452 IPR012946 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g04813 Vifa-Chr4 1519562332 1519564829 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g04813 27 498 Glycoside Hydrolase AT1G66250 54.906 0.0 550
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g04813 K19891 - gmx:100776067 836.639
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g02259 1 362315570 362317027 Vifa4g04813 4 1519562332 1519564829 PCT