Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g02259 ATGGCAATATCTTCCTTCCTCTTCAAACTGATATTGCTGTTTCTCACCATTCATGATTTGTTTATGCAAAGTCATGGCCTAAATTTTGGAATAAACTATGGACAAATAGCAAACAATTTACCCTCTCATTCACGTGTAGCAGCACTTTTAAAATCATTGAATGTCACAAGAATAAAACTCTACGATGCTGATCCAAATGTTCTATCAACATTCTCAAATACAAATGTTGAATTCATGATAGCAATTGGAAATGACAATCTTCAAAACATGAGAGACCCTATGAAAGCACAAACATGGATTCAACAAAATGTTCAACCTTACATTTCCAAAACCAAAATCACAGCAATTAACGTAGGAAACGAGGTACTAGGTAACAATGATCTCAACAGTTACATAAACCTTCTTCCAGCAATGCAATCAGTGTATAATGCACTTGTTAATCTTGGTTTATCTCAACAAGTTACTGTCACAACTTCGCATTCATATGTCATTTTGTCGAATTCATTTCCACCTTCATCCGGTGCTTTTAAAGAGGATTTAGTTCAATATATTCAACCACTTCTTAGCTTCCACGCGCAAACGAAATCTCCTTTTTTGATCAATGCTTATCCTTTTTTCGCATACAAAGGTGATCCAGAACATGTTTCATTAAACTATGTCTTATTTCAACCAAATCCTGGTTCTGTTGATCCTGTTACAAGTCTTCGTTATGATAACATGTTATATGCTCAAATTGATGCGGTTTACGCGGCTATAAAGGCGTTGGGCCATACCGATATCGAGGTTAAGATTTCTGAGACGGGTTGGCCTTCTAAAGGTGATGCTGATGAGGTTGGTGCTTCACTGCAGAATGCTGAAATTTATCATACAAATTTGTTCAAGAGGATTGAGATGAGACAAGGAACTCCTGCAAAGTCTTCTGTTCCTGTTGATATTTATGTTTTTGCACTTTTTAATGAAGATTTGAAACCTGGTCCTTCTTCTGAGAAAAACTATGGTCTTTATTATCCGGATGGTACTCCGGTTTATAACATCGGTTTGCAACAAACTCAAGGCGGCTATTTTCCAGAAATGGTTATTGAATCCAATTCCAATATTTTGTCCAACAATTTTGTCTTCTACATACTTGCATTATTATTGGTGTTTGTTTTGGAGCTTAGAAGATTTTGA 1170 0.359 MAISSFLFKLILLFLTIHDLFMQSHGLNFGINYGQIANNLPSHSRVAALLKSLNVTRIKLYDADPNVLSTFSNTNVEFMIAIGNDNLQNMRDPMKAQTWIQQNVQPYISKTKITAINVGNEVLGNNDLNSYINLLPAMQSVYNALVNLGLSQQVTVTTSHSYVILSNSFPPSSGAFKEDLVQYIQPLLSFHAQTKSPFLINAYPFFAYKGDPEHVSLNYVLFQPNPGSVDPVTSLRYDNMLYAQIDAVYAAIKALGHTDIEVKISETGWPSKGDADEVGASLQNAEIYHTNLFKRIEMRQGTPAKSSVPVDIYVFALFNEDLKPGPSSEKNYGLYYPDGTPVYNIGLQQTQGGYFPEMVIESNSNILSNNFVFYILALLLVFVLELRRF 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g02259 389 Gene3D Glycosidases 28 354 - -
Vifa1g02259 389 FunFam Glucan endo-1,3-beta-glucosidase 14 27 351 - -
Vifa1g02259 389 SUPERFAMILY (Trans)glycosidases 29 345 IPR017853 -
Vifa1g02259 389 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE BG1-RELATED-RELATED 17 348 IPR044965 GO:0004553|GO:0005975
Vifa1g02259 389 Pfam Glycosyl hydrolases family 17 30 345 IPR000490 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g02259 Vifa-Chr1 362315570 362317027 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g02259 79 386 Glycoside Hydrolase AT2G27500 61.736 1.17e-139 399
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g02259 - - gmx:100786020 577.015
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g02259 1 362315570 362317027 Vifa1g02259 1 362315570 362317027 ECH
Vifa1g02259 1 362315570 362317027 Vifa4g04813 4 1519562332 1519564829 PCT