Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vifa4g04467 | ATGGGTGTTTCTATGAGAGATTTGGATCCAGCTCTCAAGGGAGCAGGACAAAAAGATGGACTTGAAATATGGCGTATTGAGAATTTTAATCCAGTTCCCATCCCACAGTCTTCTCACGGAAAGTTTTTCAATGGAGACTCGTATGTTGTCTTGAAGACAACGACATCAAAAAGTGGTGCTCTACGCTATGATATTCATTATTGGCTTGGTAAAGACACCAGTCAGGATGAAGCTGGTGCCGCAGCCATCAAAACAGTTGAGTTGGATGCAGTTCTAGGAGGACGTGCTGTTCAGTATCGTGAAGTGCAGGGTCATGAAACACAGAAGTTCCTGTCATATTTCAAACCATGCATTATACCACAAGAAGGTGGAGCTGCCTCTGGTTTCAAGCATGTTGAAGCTGAAGAACATACGACACGGTTGTTTGTATGTAAAGGGAAACATGTTGTGAATGTCAAAGAGGTTCCTTTTGCTCGATCTTCGCTCAATCATGATGATATTTTTATTCTGGATACCGAGTCAAAAATCTTCCAATTTAATGGTTCCAATTCATGTATTCAAGAAAGGGCTAAAGCATTGGAAGTTGTTCAATTTATTAAGGATACCTACCATGATGGGAAATGTGAAGTGGCTTCTATTGAGGATGGAAGGTTGATGGCTGACTCTGAATCTGGAGAGTTCTGGGGTTTGTTTGGTGGATTTGCTCCTCTTCCACGTAAAACATTCAGTGATGATGATAAGACAATTGATTCTCATGATCCAAAGTTGCTTTGTGTTGAAAAGGGGACGGCAGAGCCTGTTGAAACTGATTCTTTGACAAAGGAATTGCTGGACACCAATAAATGCTATATTATAGATTGTGGATTGGAGGTGTATGTTTGGATGGGAAGAAATACCTCTCTTGATGATAGGAAAAGTGCAAGTGGAGCTACAGATGAGCTAGTCCGTAGCACCGACCGGCCAAAATCCCAGATAACACGTGTAATTGAAGGATTTGAAACAGTGATGTTCAAGTCCAAATTTGAGTCTTGGCCTCAGACATCTAATGTAACAATGTCTGAAGATGGTCGTGGCAAGGTAGCAGCACTTCTTAAACGTCAAGGATTGGATGTCAAGGGCCTCTTGAAAGCTGATCCAGTAAAAGAAGAACCTCAATCCTACATCGATTGCACAGGGCATTTACAGGTTTGGCGTGTGAATGGTCAAGAAAAAAAGCTTCTTGCAGCCAATGACCAGTCAAATTTTTATAGCGGAGACTGCTTCATCTTTCAGTATTCATATCCTGGGGAAGATAGGGAGGAACATCTTATAGGAACATGGATCGGAAAGAACAGTGTTGAGGAAGAAAGAGTCTCAGCTCATACACTAGCAAGCAAAATGGTCGAGTCAATGAAGTTTCTACCATCCATGGCTCGTATTTATGAAGGCTATGAAACAATTCAATTTCATTCCATCCTCCAAAGCTTTATTGTTTTTAAGGGCGGACTTGGTGATGCATACAAGAATTACATCGCCGAGAAGGAAATTCCAGATGAGACATACAGGGAGGACGGTGTTGCGTTATTCCGCATCCAAGGCTCTGGACCAGACAATATGCAGGCAATACAAGTTGATCCAGTTGCTTCCTCCTTGAATTCCTCTTATTTCTACATACTCCATAGTGAGTCCATTGTTTTTACCTGGTCTGGAAATCTTACTAAATCAGATGACCACGAGCTTGTTGAGAGAATGCTGGATTTAATTAAGCCGGATTTACAAGGCAAACCACAAAGGGAAGGTGCAGAATCTGAACAGTTTTGGGAACTATTAGGAGGAAAGACAGAATATCCCAGTCAAAAGATTGTGAGGGAAGCTGAAAATGATCCTCACCTATTTTCATGCAATTTCTCACAAGGAAATTTAAAGGTGACAGAGATACACAACTTTTCCCAGGATGATTTGATGACAGAAGATATTTTCATTTTGGATTGTCACTCTGAAATCTTTGTGTGGGTTGGCCAGCAGGTTGACCCCAAAAGTAGATTGCAGGCTCTACCAATTGGCGAGAAATTTCTTGAGCGAGATTTTCTCCTTGAAAATATATCTCGTTATACTCCAATATATTTTGTCATGGAAGGCAGTGAGCCGCCTTTCTTCACACGCTTCTTTAAATGGGATTCTGCGAAATCTTCAATGCTGGGGAACTCATTTCAAAGGAAGCTTGCAATCATGAAAAATGGGGGAACTCCACCTTTGGTTAAACCCAAAAGAAGAGCATCTGTATCTTATGGGGGAAGGTCTGGTGGCTTGCCAGAGAAATCACAACGCTCCCGCAGTATGTCTGTTAGTCCTGACCGGGCTCGTGCGCGAGGAAGATCTCCGGCCTTCAATGCCTTGGCAGCTACTTTCGAGAGCTCAAATGTTAGAAACCTTTCAACTCCACCTCCAATGATTAGAAAACTGTACCCAAAATCTAAGACACCAGATTCATCATCACCAACATCTAAATCTTCATCCATATCTAACATTACTTCTGCTTTTGAACGACCATCAGCACGAGGAAGTTTGTTTCCTAGGTCGATTAAAGATACCTCCAAGTCGGACCCAGAGACAAATAGTGACAATGAGAATTCTACGAGCAGCATAGAAGAATCTCTTACTATACAGGAAGATGTGAAAGAAGGTGAAGCTGAAGATAATGAAGGTCTTCCAGTATACCCATATGAAAGTGTTAACACAGACTCTACCGATCCTATGCCAGACATTGACGTGACTAAACGGGAGGCTTACCTGTCAAACGACGTGTTCAAAGAGAAACTGGGAATGGCCAGGAGCGAATTTTACACGTTGCCAAAATGGAAACAGAACAAACTCAAAATGGCTGTTCAGTTGTTCTGA | 2877 | 0.4195 | MGVSMRDLDPALKGAGQKDGLEIWRIENFNPVPIPQSSHGKFFNGDSYVVLKTTTSKSGALRYDIHYWLGKDTSQDEAGAAAIKTVELDAVLGGRAVQYREVQGHETQKFLSYFKPCIIPQEGGAASGFKHVEAEEHTTRLFVCKGKHVVNVKEVPFARSSLNHDDIFILDTESKIFQFNGSNSCIQERAKALEVVQFIKDTYHDGKCEVASIEDGRLMADSESGEFWGLFGGFAPLPRKTFSDDDKTIDSHDPKLLCVEKGTAEPVETDSLTKELLDTNKCYIIDCGLEVYVWMGRNTSLDDRKSASGATDELVRSTDRPKSQITRVIEGFETVMFKSKFESWPQTSNVTMSEDGRGKVAALLKRQGLDVKGLLKADPVKEEPQSYIDCTGHLQVWRVNGQEKKLLAANDQSNFYSGDCFIFQYSYPGEDREEHLIGTWIGKNSVEEERVSAHTLASKMVESMKFLPSMARIYEGYETIQFHSILQSFIVFKGGLGDAYKNYIAEKEIPDETYREDGVALFRIQGSGPDNMQAIQVDPVASSLNSSYFYILHSESIVFTWSGNLTKSDDHELVERMLDLIKPDLQGKPQREGAESEQFWELLGGKTEYPSQKIVREAENDPHLFSCNFSQGNLKVTEIHNFSQDDLMTEDIFILDCHSEIFVWVGQQVDPKSRLQALPIGEKFLERDFLLENISRYTPIYFVMEGSEPPFFTRFFKWDSAKSSMLGNSFQRKLAIMKNGGTPPLVKPKRRASVSYGGRSGGLPEKSQRSRSMSVSPDRARARGRSPAFNALAATFESSNVRNLSTPPPMIRKLYPKSKTPDSSSPTSKSSSISNITSAFERPSARGSLFPRSIKDTSKSDPETNSDNENSTSSIEESLTIQEDVKEGEAEDNEGLPVYPYESVNTDSTDPMPDIDVTKREAYLSNDVFKEKLGMARSEFYTLPKWKQNKLKMAVQLF | 958 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vifa4g04467 | 958 | ProSiteProfiles | Headpiece (HP) domain profile. | 893 | 958 | IPR003128 | GO:0003779|GO:0007010 | |
| Vifa4g04467 | 958 | MobiDBLite | consensus disorder prediction | 818 | 842 | - | - | |
| Vifa4g04467 | 958 | CDD | gelsolin_S2_like | 139 | 232 | - | - | |
| Vifa4g04467 | 958 | FunFam | Villin-like 1 | 613 | 734 | - | - | |
| Vifa4g04467 | 958 | CDD | gelsolin_S5_like | 517 | 608 | - | - | |
| Vifa4g04467 | 958 | FunFam | Gelsolin | 518 | 612 | - | - | |
| Vifa4g04467 | 958 | Gene3D | Severin | 133 | 246 | IPR029006 | - | |
| Vifa4g04467 | 958 | Gene3D | Severin | 613 | 735 | IPR029006 | - | |
| Vifa4g04467 | 958 | CDD | gelsolin_S3_like | 254 | 343 | - | - | |
| Vifa4g04467 | 958 | FunFam | Gelsolin | 6 | 131 | - | - | |
| Vifa4g04467 | 958 | CDD | gelsolin_S1_like | 12 | 124 | - | - | |
| Vifa4g04467 | 958 | FunFam | Villin-4 | 248 | 354 | - | - | |
| Vifa4g04467 | 958 | Pfam | Villin headpiece domain | 923 | 958 | IPR003128 | GO:0003779|GO:0007010 | |
| Vifa4g04467 | 958 | Gene3D | Severin | 247 | 358 | IPR029006 | - | |
| Vifa4g04467 | 958 | SMART | VILL_6 | 519 | 606 | IPR007122 | GO:0051015 | |
| Vifa4g04467 | 958 | SMART | VILL_6 | 137 | 234 | IPR007122 | GO:0051015 | |
| Vifa4g04467 | 958 | SMART | VILL_6 | 254 | 344 | IPR007122 | GO:0051015 | |
| Vifa4g04467 | 958 | SMART | VILL_6 | 392 | 489 | IPR007122 | GO:0051015 | |
| Vifa4g04467 | 958 | SMART | VILL_6 | 19 | 117 | IPR007122 | GO:0051015 | |
| Vifa4g04467 | 958 | SMART | VILL_6 | 622 | 719 | IPR007122 | GO:0051015 | |
| Vifa4g04467 | 958 | CDD | gelsolin_S6_like | 621 | 720 | - | - | |
| Vifa4g04467 | 958 | MobiDBLite | consensus disorder prediction | 738 | 785 | - | - | |
| Vifa4g04467 | 958 | Gene3D | Villin headpiece domain | 896 | 958 | IPR036886 | GO:0003779|GO:0007010 | |
| Vifa4g04467 | 958 | SMART | VHP_1 | 923 | 958 | IPR003128 | GO:0003779|GO:0007010 | |
| Vifa4g04467 | 958 | MobiDBLite | consensus disorder prediction | 864 | 879 | - | - | |
| Vifa4g04467 | 958 | CDD | gelsolin_S4_like | 387 | 485 | - | - | |
| Vifa4g04467 | 958 | SUPERFAMILY | VHP, Villin headpiece domain | 883 | 958 | IPR036886 | GO:0003779|GO:0007010 | |
| Vifa4g04467 | 958 | PRINTS | Gelsolin family signature | 323 | 344 | IPR007122 | GO:0051015 | |
| Vifa4g04467 | 958 | PRINTS | Gelsolin family signature | 592 | 611 | IPR007122 | GO:0051015 | |
| Vifa4g04467 | 958 | PRINTS | Gelsolin family signature | 411 | 427 | IPR007122 | GO:0051015 | |
| Vifa4g04467 | 958 | PRINTS | Gelsolin family signature | 469 | 489 | IPR007122 | GO:0051015 | |
| Vifa4g04467 | 958 | PRINTS | Gelsolin family signature | 436 | 454 | IPR007122 | GO:0051015 | |
| Vifa4g04467 | 958 | PRINTS | Gelsolin family signature | 532 | 552 | IPR007122 | GO:0051015 | |
| Vifa4g04467 | 958 | PRINTS | Gelsolin family signature | 644 | 666 | IPR007122 | GO:0051015 | |
| Vifa4g04467 | 958 | Pfam | Gelsolin repeat | 149 | 214 | IPR007123 | - | |
| Vifa4g04467 | 958 | Pfam | Gelsolin repeat | 266 | 337 | IPR007123 | - | |
| Vifa4g04467 | 958 | Pfam | Gelsolin repeat | 636 | 710 | IPR007123 | - | |
| Vifa4g04467 | 958 | Pfam | Gelsolin repeat | 28 | 111 | IPR007123 | - | |
| Vifa4g04467 | 958 | SUPERFAMILY | Actin depolymerizing proteins | 138 | 240 | - | - | |
| Vifa4g04467 | 958 | Gene3D | Severin | 517 | 612 | IPR029006 | - | |
| Vifa4g04467 | 958 | Gene3D | Severin | 388 | 500 | IPR029006 | - | |
| Vifa4g04467 | 958 | SUPERFAMILY | Actin depolymerizing proteins | 223 | 349 | - | - | |
| Vifa4g04467 | 958 | SUPERFAMILY | Actin depolymerizing proteins | 382 | 528 | - | - | |
| Vifa4g04467 | 958 | MobiDBLite | consensus disorder prediction | 800 | 913 | - | - | |
| Vifa4g04467 | 958 | Gene3D | Severin | 7 | 132 | IPR029006 | - | |
| Vifa4g04467 | 958 | SUPERFAMILY | Actin depolymerizing proteins | 595 | 717 | - | - | |
| Vifa4g04467 | 958 | SUPERFAMILY | Actin depolymerizing proteins | 10 | 147 | - | - | |
| Vifa4g04467 | 958 | PANTHER | VILLIN | 9 | 948 | IPR007122 | GO:0051015 | |
| Vifa4g04467 | 958 | FunFam | Villin-like 1 | 132 | 247 | - | - | |
| Vifa4g04467 | 958 | SUPERFAMILY | Actin depolymerizing proteins | 511 | 613 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vifa4g04467 | Vifa-Chr4 | 1410772505 | 1410779093 | Dispersed/Tandem |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vifa4g04467 | - | - | gmx:100807762 | 1573.53 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Vifa4g04467 | 4 | 1410772505 | 1410779093 | Vifa4g04467 | 4 | 1410772505 | 1410779093 | ECH | |
| Vifa1g09010 | 1 | 1429768469 | 1429786686 | Vifa4g04467 | 4 | 1410772505 | 1410779093 | PCT |