Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g09010 ATGGCAGTTTCCATGAGAGATGTGGATCCAGCTTTTCAGGGAGCTGGACAAAAGGCTGGGCTTGAAATATGGCGTATTGAGAATTTTAATCCAAAATCTATCCCAAAGTCTTCTTATGGCAAATTTTTTACTGGGGATTCCTATGTGATCTTAAAGACAACCGCATCAAAAAGTGGAGCTCTGCGTCATGACATCCATTACTGGATTGGTAAAGACACTAGTCAGGATGAAGCTGGTGTTGCAGCCATCAAGACTGTTGAGCTGGATGCAGCTCTTGGAGGACGTGCTGTTCAGTATCGGGAAGTACAGGGCCATGAAACTGAAAAGTTCCTGTCTTATTTCAAACCGTGTATTATACCTCTAGAAGGTGGAGTTGCTTCTGGTTTTAAACATGCTGAGGCTGAAAAACATAAGACACGGTTGTTTGTATGCAGAGGGAAACATGTTGTGCATGTCAAAGAGGTTCCTTTTGCTCGATCTTCACTCAACCATGACGATATTTTTGTTCTCGACACTGAGTCAAAAATCTTCCAATTTAATGGTTCCAATTCATCTATTCAAGAAAGGGCTAAAGCTTTGGAAGTTGTACAGTATATTAAAGATACCTACCACGAGGGAAAGTGCGAGATAGCTGCCATTGAGGATGGAAAGTTAATGGCTGATTCTGAAACTGGGGAATTCTGGGGTTTCTTTGGCGGATTTGCTCCTCTTCCGCGAAAAGCAGCAAGTGATGATAACAAGTCTGCTGATTCCCGCTCTCCAAAACTGCTTTGTGTTGAAAAGGGACAAGCCGAACACGTTGAGGCTGATTCTTTCAAAAGGGAGTTTCTAGACACAAATAAATGTTATATTCTGGATTGTGGGTTGGAAATGTTTGTCTGGATGGGAAGAAACACCTCTCTTGATGACAGAAAAAGTGCAAGTGGAGTTGCTGATGAGTTAGTAAGTGGCATAGATCAACTTAAACCCCAAATAATTCGAGTAATTGAAGGATTTGAAACAGTGTTGTTTAAGTCCAAGTTTGATTCTTGGCCTCAGACCCCTGATGTAACTGTATCTGAAGACGGACGTGGCAAGGTAGCAGCACTTCTGAAACGTCAAGGAGTAAATGTCAAGGGTCTGTTGAAGGCTGATGCAGTAAAAGAAGAACCTCAACCTCACATTGATTGCACTGGACATTTGCAGGTTTGGCGCGTGAACGGTCAGGAAAAGATTCTTCTCCCAGCTTCTGATCAGTCAAAATTTTATAGTGGAGATTGCTTCATCTTTCAATATTTATATCCTGGAGAAGATAAGGACGATTGTCTTATTGGAACGTGGATAGGAAAGAGCAGTGTTGAGGAAGAAAGAGCTTCAGCTAATTCACTGGCTAGTAAAATGGTTGAATCAATGAAGTTTCTGGCTTCCCAGGCTCGTATATACGAAGGCAATGAACCAATTCAATTTCATTCTATCCTACAAACCTTCATTGTTTTTAAGGGTGGGCTTGGTGATGCATACAAGACTTACATTGCAGAAAAGGAAATTCCAGATGAGACATACAGTGAGGATGGTGTTGCACTATTCCGCATCCAGGGCTCTGGACCAGATAATATGCAAGCTATACAAGTTGAACCTGTTGCTTCTTCCTTGAATTCCTCTTATTGCTACATACTTCATAATGGGCCTGCTGTCTTTACTTGGTCTGGAAGTAATACAAGTGCAGAAGACCAGGAACTTGTAGAGAGGATGCTGGATTTGATAAAGCCAAATTTACAATCAAAACCACAAAGGGAAGGTACAGAATCTGAACAGTTTTGGGATTTGTTGGGAGGAAAATCAGAATATCCCAGTCAAAAGACTAGTAGGGAGGCTGAGAGTGATCCTCACCTATTTTGTTGCAACTTCTCAAAAGGAAACTTAAAGGTAACAGAGATATACAACTTCTCCCAGGATGATTTAATGACAGAAGACATTTTCATCTTGGATTGTTACTCGGATATATTTGTCTGGGTTGGCCAGGAGGTTGACACCAAGAGTAGAATGCAGGCGCTAACAATTGGTGAGAAATTTCTTGAGCACGACTTTCTGCTGGAAAAAATATCTCGGGTGGCTCCAATATATGTTGTCATGGAAGGGAGTGAGCCACCGTTTTTCACTCGCTTTTTTAATTGGGAGTCGGCAAAATCTGCAATGTTGGGGAACTCATTTCAAAGGAAGCTTAAAATCGTTAAAAATGGGGGTACTGCACCAGTGGCGAAACCCAAACGGCGAACAACTTCACACGGAGGAAGGTCTAGTAGTGTGCCTGATAAATCCCAGCGTTCCTCCCGTAGCATGTCTGTTAGTCCTGACCGGGTTCGTGTGAGGGGCAGGTCTCCAGCCTTTAATGCACTAGCAGCTACTTTCGAGAGCGCCAATGCTAGGAACCTTTCAACTCCACCTCCAGTGATTAGAAAGCTGTATCCAAAATCTACGACACCAGATTCTGCAATACTAGCATCAAAATCTAAAGCCATAGCTGCTCTTACTTCTAGTTTTGAACAACCACCTTCTGCACGTGAAAGCATGATACCCCGTGCAGTTAAAGTGAGTCCAGTCACCCCTAAATCAAACCCTGAGAAAAATGATAAGGAGAATTCTGTGAGCGGCAGAGTGGAATCTCTTACCATAGAGGAAGATGTGAAAGAAGGTGAAGCTGAAGACGAGGAAGGTCTCCTGATTTACCCATATGAACGCCTTAAAATAACATCTATAGATCCTGTGCCGGACATCGATGTAACTAAAAGAGAGACTTATCTATCATCTGCCGAGTTCAAAGAGAAATTTGGGATGTCCAAGGACGCTTTTTACAAGTTGCCCAAATGGAAGCAAAACAAACTCAAAATGGCTATTCAGTTATTCTGA 2886 0.4234 MAVSMRDVDPAFQGAGQKAGLEIWRIENFNPKSIPKSSYGKFFTGDSYVILKTTASKSGALRHDIHYWIGKDTSQDEAGVAAIKTVELDAALGGRAVQYREVQGHETEKFLSYFKPCIIPLEGGVASGFKHAEAEKHKTRLFVCRGKHVVHVKEVPFARSSLNHDDIFVLDTESKIFQFNGSNSSIQERAKALEVVQYIKDTYHEGKCEIAAIEDGKLMADSETGEFWGFFGGFAPLPRKAASDDNKSADSRSPKLLCVEKGQAEHVEADSFKREFLDTNKCYILDCGLEMFVWMGRNTSLDDRKSASGVADELVSGIDQLKPQIIRVIEGFETVLFKSKFDSWPQTPDVTVSEDGRGKVAALLKRQGVNVKGLLKADAVKEEPQPHIDCTGHLQVWRVNGQEKILLPASDQSKFYSGDCFIFQYLYPGEDKDDCLIGTWIGKSSVEEERASANSLASKMVESMKFLASQARIYEGNEPIQFHSILQTFIVFKGGLGDAYKTYIAEKEIPDETYSEDGVALFRIQGSGPDNMQAIQVEPVASSLNSSYCYILHNGPAVFTWSGSNTSAEDQELVERMLDLIKPNLQSKPQREGTESEQFWDLLGGKSEYPSQKTSREAESDPHLFCCNFSKGNLKVTEIYNFSQDDLMTEDIFILDCYSDIFVWVGQEVDTKSRMQALTIGEKFLEHDFLLEKISRVAPIYVVMEGSEPPFFTRFFNWESAKSAMLGNSFQRKLKIVKNGGTAPVAKPKRRTTSHGGRSSSVPDKSQRSSRSMSVSPDRVRVRGRSPAFNALAATFESANARNLSTPPPVIRKLYPKSTTPDSAILASKSKAIAALTSSFEQPPSARESMIPRAVKVSPVTPKSNPEKNDKENSVSGRVESLTIEEDVKEGEAEDEEGLLIYPYERLKITSIDPVPDIDVTKRETYLSSAEFKEKFGMSKDAFYKLPKWKQNKLKMAIQLF 961
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g09010 961 Pfam Villin headpiece domain 926 961 IPR003128 GO:0003779|GO:0007010
Vifa1g09010 961 Pfam Gelsolin repeat 638 712 IPR007123 -
Vifa1g09010 961 Pfam Gelsolin repeat 150 216 IPR007123 -
Vifa1g09010 961 Pfam Gelsolin repeat 267 334 IPR007123 -
Vifa1g09010 961 Pfam Gelsolin repeat 31 111 IPR007123 -
Vifa1g09010 961 Gene3D Severin 613 733 IPR029006 -
Vifa1g09010 961 SMART VHP_1 926 961 IPR003128 GO:0003779|GO:0007010
Vifa1g09010 961 Gene3D Severin 248 355 IPR029006 -
Vifa1g09010 961 Gene3D Severin 133 247 IPR029006 -
Vifa1g09010 961 CDD gelsolin_S5_like 517 608 - -
Vifa1g09010 961 FunFam Villin-4 385 519 - -
Vifa1g09010 961 SUPERFAMILY VHP, Villin headpiece domain 887 961 IPR036886 GO:0003779|GO:0007010
Vifa1g09010 961 CDD gelsolin_S3_like 254 343 - -
Vifa1g09010 961 CDD gelsolin_S1_like 12 124 - -
Vifa1g09010 961 FunFam Gelsolin 520 612 - -
Vifa1g09010 961 Gene3D Severin 517 612 IPR029006 -
Vifa1g09010 961 PANTHER VILLIN 7 951 IPR007122 GO:0051015
Vifa1g09010 961 MobiDBLite consensus disorder prediction 755 776 - -
Vifa1g09010 961 ProSiteProfiles Headpiece (HP) domain profile. 896 961 IPR003128 GO:0003779|GO:0007010
Vifa1g09010 961 SUPERFAMILY Actin depolymerizing proteins 382 528 - -
Vifa1g09010 961 CDD gelsolin_S2_like 138 217 - -
Vifa1g09010 961 PRINTS Gelsolin family signature 323 344 IPR007122 GO:0051015
Vifa1g09010 961 PRINTS Gelsolin family signature 644 666 IPR007122 GO:0051015
Vifa1g09010 961 PRINTS Gelsolin family signature 411 427 IPR007122 GO:0051015
Vifa1g09010 961 PRINTS Gelsolin family signature 469 489 IPR007122 GO:0051015
Vifa1g09010 961 PRINTS Gelsolin family signature 592 611 IPR007122 GO:0051015
Vifa1g09010 961 PRINTS Gelsolin family signature 436 454 IPR007122 GO:0051015
Vifa1g09010 961 PRINTS Gelsolin family signature 673 692 IPR007122 GO:0051015
Vifa1g09010 961 PRINTS Gelsolin family signature 532 552 IPR007122 GO:0051015
Vifa1g09010 961 SUPERFAMILY Actin depolymerizing proteins 129 243 - -
Vifa1g09010 961 SUPERFAMILY Actin depolymerizing proteins 511 615 - -
Vifa1g09010 961 SMART VILL_6 519 606 IPR007122 GO:0051015
Vifa1g09010 961 SMART VILL_6 19 117 IPR007122 GO:0051015
Vifa1g09010 961 SMART VILL_6 392 489 IPR007122 GO:0051015
Vifa1g09010 961 SMART VILL_6 254 344 IPR007122 GO:0051015
Vifa1g09010 961 SMART VILL_6 137 234 IPR007122 GO:0051015
Vifa1g09010 961 SMART VILL_6 622 719 IPR007122 GO:0051015
Vifa1g09010 961 MobiDBLite consensus disorder prediction 741 782 - -
Vifa1g09010 961 SUPERFAMILY C-terminal, gelsolin-like domain of Sec23/24 254 427 IPR036180 -
Vifa1g09010 961 FunFam Villin-like 1 132 247 - -
Vifa1g09010 961 FunFam Villin-like 1 899 961 - -
Vifa1g09010 961 FunFam Villin-like 1 613 734 - -
Vifa1g09010 961 Gene3D Severin 388 500 IPR029006 -
Vifa1g09010 961 MobiDBLite consensus disorder prediction 857 879 - -
Vifa1g09010 961 SUPERFAMILY Actin depolymerizing proteins 9 147 - -
Vifa1g09010 961 SUPERFAMILY Actin depolymerizing proteins 595 717 - -
Vifa1g09010 961 CDD gelsolin_S6_like 621 718 - -
Vifa1g09010 961 Gene3D Villin headpiece domain 899 961 IPR036886 GO:0003779|GO:0007010
Vifa1g09010 961 CDD gelsolin_S4_like 388 485 - -
Vifa1g09010 961 Gene3D Severin 7 132 IPR029006 -
Vifa1g09010 961 FunFam Gelsolin 6 131 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g09010 Vifa-Chr1 1429768469 1429786686 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g09010 - - gmx:100809968 1703.72
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g09010 1 1429768469 1429786686 Vifa4g04467 4 1410772505 1410779093 PCT