Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g04444 ATGCCGCCGGCCGTGTTGAATCCGCCATTGTCCAAATCCTCGTCGGTACATTCATTAACATCCGACGCCGTTTTCTATGATCCCACGCCGGAGAGTCAGCAATTCGACGATCTTAGAGGTTTGCAGTGGCGTATAAACCTTGGGGTTTTGCCTTCTTCTTCCTCCTCAACTCTCATTGATGATCTTCGTCGTGCAACCGCTAATTCTCGGAGGAGGTATGCGAGTTTGAGAGGGCGGCTCCTGGTTGATCCTCATGTTAAAATGGATGGAAGTAGTTCGCCTAATCTTGTCATGGACAACCCACTTTCGCAAAATCCAAACAGTACATGGGGTCGCTTTTTTCACAATGCGGAGATGGAGAGGATGGTGGATCAGGATCTATCACGCTTATATCCGGAACATGGAAGCTATTTCCAGACAAAAGGGTGCCAAGGCATATTGAGACGCATTTTATTATTATGGTGTCTTAGACACCCCGAGTATGGTTATAGACAAGGAATGCACGAGTTACTTGCTCCTTTGCTTTATGTTCTCCAAGTTGATGTGGAGCACCATTTAGAAGTTCGGAAACTTTATGAAGATCACTTCACAGACAGATTTGATGATCTCCTTTGCCAAGAGAATGATCTTGCTTACAGCTTTGATTTTAAAAAATCTTCAGACTTGACGAATGATGAAATTGGCTCCCATGGAAATGGAATGAAAATTAAGAGTCTTGATGAGCTTGATCCTAAGATACAGACCATTGTGTTGCTAAGTGACGCTTATGAGGCTGAAGGTGAACTGGGCATTGTTTTATCTGAGAAATTCATTGAGCATGATGCTTACTGCATGTTTGAAGCTTTAATGAATGGTGCTCACGGTTCAGTTGCAATGGCCTATTTTTTCTCTTATTCCCCTGATCCTGGTTCCCAAACTGGTTTGCCACCTGTAATTGAAGCTTCCACTGCATTGTATCATTTGTTGTCTCATGTGGATTCTTCTCTGTATAGCCATCTTGTTGATCTCGGGGTTGAACCACAGTACTTTGCTCTCCGCTGGTTGAGAGTTTTATTTGGACGAGAATTTTCACTTGACAACCTCTTGATCATCTGGGATGAAATCTTTTTATCAGATAATAGTAAAACGGAAAAGCTCGTGGAGGACAATGCAGACAATGGTTTAAGGATCTTTCACTCGTGTCGTGGAGCATTTATCTCAGCTATTGCTGTGGCAATGTTACTTCATATAAGATCTTCACTACTTGCGACTGAAAATCCTACGACTTGTCTCCAGAGATTATTAAGCTTCCCTGAGGACGCAGACATTCAAAAACTAATAGAAAAGGCTAAATCCTTGCAGACTCTGGCATTAAGTCCTGAAATTTCATCCTCCACACCTGCACTTGTAGAGTATCACAACAATGGTAAATCAGTAATTGCAAGATCTGTTTCCATTCCAATTGAATCAGGTTCACCAAAAACTCCTAAGAATTTTCAGCCTAATAATAGCTACTGGGAAGAAAAGTGGCGAGTTGTCCACAGTGCTGAAGAACTTAAACAAGATGAAGTAGAAAAGCAGGTTCCATCTCAGAAAAGGAGATGGACAGAAAAGGTAAAGTTAAGTTTGAAAAGAACAGAATCCGAACCATCTTCATCAACGACTAAGAGTGGTAAACGGGAATCTAAGACATCTGTTAAACGGAGTTTATTAAAAGATCTTTCCAAGGAACTTCAGGTAGAAGAAGATACAGAAAAACTCGGCGGCCGTGAAATCTTATGCCAGCAGGATAATCATTCAGTAGCAGTTGAAGTGGAGAAACAAGATGATAGCTCTACTTCCAATGGCAATGAGGAAACCTGTGCTGACGATAGACTTCCAAGTAAAAACAATGGCAATGAAGAAACTTCATTTTACCCGGCTAGTCCTCCTAATGAGATCAACAATAATGAAAATGAAAATGTCTCACAGAAAAGTAATGTTGGGTCTAATTTATCCGTTGATATTATTAGTGAAATTTTATATGGTAGTCCCGTTGATTCGCCTCTTCCAATCTCCGATCATCCCGAGAATAACCTATCTCCGGCGCCAGGGCGCAATAATGATTTCACAGGAAATTTGGCCACACTTTCTAGGGATATAAAACTGAATAAATTCCAGTGGCTTTGGAAGTTTGGTCGTAAGAACGGAGAGTTAGTGTCTGAGAAAAGAGGGCGTGCTTCTGAGCCGTTAAAGCCGACCAACAATTGTAATAATCAAACTAACACAGTACCCTCATCTATAGCTGGCGAGCATAGCAGCTCCGTTAATTTAAAAGGAGATTCTGCTGATCAGAATGTGATGGGAACTTTGAGGAATATTGGGCAGTCCATGCTTGAACATATTCAGGTGATTGAGTCTGCTTTCCAACAGGAGTGTGGTCAGGGAGCTTCATTGGACAATGATACATCTAAAAATGTTCTGGTTGGCAAAGGGCAGGTTACTGCAATGTCGGCTCTCAAGGAGCTGCGCCAAATTAGCAACATTTTGTCTGAGATGTGA 2520 0.4179 MPPAVLNPPLSKSSSVHSLTSDAVFYDPTPESQQFDDLRGLQWRINLGVLPSSSSSTLIDDLRRATANSRRRYASLRGRLLVDPHVKMDGSSSPNLVMDNPLSQNPNSTWGRFFHNAEMERMVDQDLSRLYPEHGSYFQTKGCQGILRRILLLWCLRHPEYGYRQGMHELLAPLLYVLQVDVEHHLEVRKLYEDHFTDRFDDLLCQENDLAYSFDFKKSSDLTNDEIGSHGNGMKIKSLDELDPKIQTIVLLSDAYEAEGELGIVLSEKFIEHDAYCMFEALMNGAHGSVAMAYFFSYSPDPGSQTGLPPVIEASTALYHLLSHVDSSLYSHLVDLGVEPQYFALRWLRVLFGREFSLDNLLIIWDEIFLSDNSKTEKLVEDNADNGLRIFHSCRGAFISAIAVAMLLHIRSSLLATENPTTCLQRLLSFPEDADIQKLIEKAKSLQTLALSPEISSSTPALVEYHNNGKSVIARSVSIPIESGSPKTPKNFQPNNSYWEEKWRVVHSAEELKQDEVEKQVPSQKRRWTEKVKLSLKRTESEPSSSTTKSGKRESKTSVKRSLLKDLSKELQVEEDTEKLGGREILCQQDNHSVAVEVEKQDDSSTSNGNEETCADDRLPSKNNGNEETSFYPASPPNEINNNENENVSQKSNVGSNLSVDIISEILYGSPVDSPLPISDHPENNLSPAPGRNNDFTGNLATLSRDIKLNKFQWLWKFGRKNGELVSEKRGRASEPLKPTNNCNNQTNTVPSSIAGEHSSSVNLKGDSADQNVMGTLRNIGQSMLEHIQVIESAFQQECGQGASLDNDTSKNVLVGKGQVTAMSALKELRQISNILSEM 839
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g04444 839 MobiDBLite consensus disorder prediction 516 562 - -
Vifa4g04444 839 ProSiteProfiles TBC/rab GAP domain profile. 33 372 IPR000195 -
Vifa4g04444 839 SMART tbc_4 30 418 IPR000195 -
Vifa4g04444 839 MobiDBLite consensus disorder prediction 600 614 - -
Vifa4g04444 839 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 308 447 IPR035969 -
Vifa4g04444 839 MobiDBLite consensus disorder prediction 674 693 - -
Vifa4g04444 839 MobiDBLite consensus disorder prediction 516 538 - -
Vifa4g04444 839 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 36 332 IPR035969 -
Vifa4g04444 839 MobiDBLite consensus disorder prediction 597 652 - -
Vifa4g04444 839 Pfam Rab-GTPase-TBC domain 272 373 IPR000195 -
Vifa4g04444 839 Pfam Rab-GTPase-TBC domain 120 179 IPR000195 -
Vifa4g04444 839 FunFam TBC1 domain family member 5 311 455 - -
Vifa4g04444 839 Gene3D putative rabgap domain of human tbc1 domain family member 14 like domains 107 289 - -
Vifa4g04444 839 Gene3D - 311 453 - -
Vifa4g04444 839 PANTHER TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN 36 428 - -
Vifa4g04444 839 MobiDBLite consensus disorder prediction 624 652 - -
Vifa4g04444 839 MobiDBLite consensus disorder prediction 547 562 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g04444 Vifa-Chr4 1405755260 1405759314 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g04444 K18469 - gmx:100816501 1122.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g04444 4 1405755260 1405759314 Vifa4g04444 4 1405755260 1405759314 ECH
Vifa4g04444 4 1405755260 1405759314 Vifa1g08932 1 1414879608 1414883502 PCT