Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g08932 ATGCAGCAAGCTGTGGTGGATCCTTTGTTATCGCCTCGTTCTCGGAGATCGGCGCCGGAGAAGCCGCGATTTAGTGATCTTAGAGGGTTGCAGTGGCGTATAAATCTTGGAGTTTTGCCGTCTTCTTCTGCTGCTTCCATTGATGATCTTCGTCGAGTTACTGCTGATTGTAGAAGGAGGTATGCAAGTTTGAGAAGGCGCCTCCTGGCTGAAGCCCCTTCTCCGAAGAATGGAACTAACTCGCGGAATCTTGTCATGGACAATCCACTTTCACAAAATCCAGATAGTACATGGAGTCGCTTTTTCCGCAACGCTGAGCTAGAAAGATTGGTTGATCAAGATTTGTCCCGTTTGTACCCGGAACATGACAGTTATTTCCAGTCACTAGGATGCCAAGGCATGTTGAGACGCATTTTATTGCTATGGTGTCTCAAGCACCCTGAATGTGGTTATAGACAAGGAATGCATGAATTAATGGCTCCTCTGCTTTATGTTCTCCAAGTTGATTTGGAGCGTCTCTCAGAAGTTCGGAAGCTTTATGAAGATCACTTTACAGACCGATTTGATGTTCTTTTATGTCAAGAGAATGATCTTAATTACAGCTTTGATTTTAGGAAATCCCCTGACACAATGGAGGATGAAATCGGATCCCACGGAAATGCAATGAAAGCCAGTAGTCTTGACGAACTTGAACCCGAGATACGGTCCATTGTATTACTAAGTGATGCATATGGAGCTGAAGGGGCCAATGGTTCAGTTGCAATGGCGGATTTCTTCGCTTCATCTCCTGTAGCTAGTTCCCATACTGGCTTGCCTCCTGTGATTGAAGCTTCTATGGCATTGTATCATTTGTTATCGCTTGCTGATTCTTCTCTTCATAACCATCTTTTGGATCTTGGGGTTGAACCGCAGTACTTTTATCTCCGATGGTTGCGGGTTTTATTTGGACGAGAGTTTTCACTTGACAAACTACTTATCATTTGGGATGAGATCTTTGCATCAGATAATTGCAAAATGGAAAATAGTGCGGATGACGACATAGATTATGGCTTCAGGATCTTACATTCACCCCGTGGAGCATTTATCTCATCTATTGCTGTAGCAATGATACTCTATTTAAGATCTTCTCTACTTGCAACTGAAAATCCTACAACCTGTCTCCAGAGACTACTCAACTTCCCCGAAAACATCACTATTGAGAAAATACTAAAGAAGGCTAAATCCTTGCAGGATCTTGCTTTAAGTATTGATATTTCGTCCTCGTCACATTTGCTTTTGGGGTCTCGTTACCAAAGTAAAACGACATGTACAAGATCTGTGACCCTTCCATCTGAATCTGTGTCACCGAAAACTCCTCTGAATTTTATACCCGATAGCTACTGGGAAGAAAAGTGGAGAAACGCCCAAAAGGCTGAAGCCCAAAAGGCCGAAGAACGTAAACAAGATGGTGCAGAAAATCAGGTTCCAACTCGGAAGAAAGGATGGACAGAAAAGATGAAATTACGTTTGAGAAGAACAGAATCTGACCCACCTCCATCAAGGGTTCTAAGCGGACAAAGAGGATCTAAGCCATCGTTTAGACGCAGTTTGTTAGAAGATCTGCGCAAAGCACTTGGCGCTGAGGAAAACACAGAACATGAGCAGCATCATGATGAAATCATAAGTGAACAGGATAATCTTTCTGAAGCAGTTGAAGTAGAGCGACAAGATAGTGGCAGTAACAGTGACAACAACTACTCATCTGATGATAAATGTCCAAGCGGAAATTCTGGCCGCGATGAAGATTCGTCTATATATTCTGACTCCATCAGTCCTCCTAATGAGGCCAATGATCCTGAAATCGCCTCAGAAAAAAATAGTGCTGCATCTTTTTTATCCCTTGACGAATGCAATGAAACTTCAGATACCATCCCTTGTGATTCACCCTCTCCAATCTCTGATCCACCTCAGAACTTACCTGAGACATCAGGTTGCGATAATGACGATGCTGGAAGCTCAGCCACAGCCCCTAAAGAAAGAAAACAGAATAAATTCCAGTGGTTTTGGAATTTTGGACGGAATACCGTTGATGTTATCTCTGAGAAAGTAGGAGGTGCTGCCGAGGCTAAGTCTTCCAACAGTAATAGCGATCAAAGTAATTCATCACCACCACTAGCCTCACCTGCTGTTAATGGACATTGTAGTTCTGTTAGTGGCAGAGGAGATTCCGTTGACCAAAATGTGATGAGCACTTTAAAAAATATTGGGCAGTCTATGCTTGACCATATTCAGGTGATTGAGTCTGTTTTCCAACCAGATCGAGGCCAGGGAGCCACGTCCGATAATTTGTCTAAGAATGTTCTTGTTGGAAAAGGGCAGGTTACTGCCATGACAGCTCTAAAGGAGCTTCGGAAAATCAGCAACCTTTTGTCTGAGATGTGA 2421 0.4325 MQQAVVDPLLSPRSRRSAPEKPRFSDLRGLQWRINLGVLPSSSAASIDDLRRVTADCRRRYASLRRRLLAEAPSPKNGTNSRNLVMDNPLSQNPDSTWSRFFRNAELERLVDQDLSRLYPEHDSYFQSLGCQGMLRRILLLWCLKHPECGYRQGMHELMAPLLYVLQVDLERLSEVRKLYEDHFTDRFDVLLCQENDLNYSFDFRKSPDTMEDEIGSHGNAMKASSLDELEPEIRSIVLLSDAYGAEGANGSVAMADFFASSPVASSHTGLPPVIEASMALYHLLSLADSSLHNHLLDLGVEPQYFYLRWLRVLFGREFSLDKLLIIWDEIFASDNCKMENSADDDIDYGFRILHSPRGAFISSIAVAMILYLRSSLLATENPTTCLQRLLNFPENITIEKILKKAKSLQDLALSIDISSSSHLLLGSRYQSKTTCTRSVTLPSESVSPKTPLNFIPDSYWEEKWRNAQKAEAQKAEERKQDGAENQVPTRKKGWTEKMKLRLRRTESDPPPSRVLSGQRGSKPSFRRSLLEDLRKALGAEENTEHEQHHDEIISEQDNLSEAVEVERQDSGSNSDNNYSSDDKCPSGNSGRDEDSSIYSDSISPPNEANDPEIASEKNSAASFLSLDECNETSDTIPCDSPSPISDPPQNLPETSGCDNDDAGSSATAPKERKQNKFQWFWNFGRNTVDVISEKVGGAAEAKSSNSNSDQSNSSPPLASPAVNGHCSSVSGRGDSVDQNVMSTLKNIGQSMLDHIQVIESVFQPDRGQGATSDNLSKNVLVGKGQVTAMTALKELRKISNLLSEM 806
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g08932 806 MobiDBLite consensus disorder prediction 1 22 - -
Vifa1g08932 806 Coils Coil 466 486 - -
Vifa1g08932 806 MobiDBLite consensus disorder prediction 700 735 - -
Vifa1g08932 806 FunFam TBC1 domain family member 5 274 418 - -
Vifa1g08932 806 Gene3D - 274 417 - -
Vifa1g08932 806 MobiDBLite consensus disorder prediction 467 527 - -
Vifa1g08932 806 MobiDBLite consensus disorder prediction 631 672 - -
Vifa1g08932 806 MobiDBLite consensus disorder prediction 540 565 - -
Vifa1g08932 806 SMART tbc_4 19 381 IPR000195 -
Vifa1g08932 806 MobiDBLite consensus disorder prediction 467 509 - -
Vifa1g08932 806 PANTHER TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN 25 390 - -
Vifa1g08932 806 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 271 410 IPR035969 -
Vifa1g08932 806 MobiDBLite consensus disorder prediction 566 615 - -
Vifa1g08932 806 Gene3D putative rabgap domain of human tbc1 domain family member 14 like domains 91 188 - -
Vifa1g08932 806 MobiDBLite consensus disorder prediction 540 615 - -
Vifa1g08932 806 Pfam Rab-GTPase-TBC domain 107 167 IPR000195 -
Vifa1g08932 806 Pfam Rab-GTPase-TBC domain 276 334 IPR000195 -
Vifa1g08932 806 ProSiteProfiles TBC/rab GAP domain profile. 22 335 IPR000195 -
Vifa1g08932 806 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 25 166 IPR035969 -
Vifa1g08932 806 MobiDBLite consensus disorder prediction 650 672 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g08932 Vifa-Chr1 1414879608 1414883502 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g08932 K18469 - gmx:100816501 943.725
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g08932 1 1414879608 1414883502 Vifa1g08932 1 1414879608 1414883502 ECH
Vifa4g04444 4 1405755260 1405759314 Vifa1g08932 1 1414879608 1414883502 PCT