Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g04443 ATGGGAACGTTCCAGACATTGAGAAAGGCCTACGGAGCTCTCAAAGATTCCACCAAAGTTGGCCTTGCCAAGGTCAATAGCGAATACAAGGAATTGGACATTGCGATTGTAAAAGCTACCAGTCACGTCGAATATCCTCCTAAGGAACGTCACGTTCGAAAGATATTCTATGCCACATCGGCGCACCAACCACGGGCAGATGTAGCTTATTGCATTCACACGCTTTCGAAAAGGCTTTTCAAGACGCGGAGTTGGATAGTTGCTTTGAAGACATTGATAGTGATTCATAGGATATTGAGAGAGGGTGATCCTAGCTTCAAAGAAGATCTTGTAAACTACTCACACAGGGTACAATTTCTTCAAATTTCCAGTTTCAAAGATGACTCAACCCCTCTAGCCTGGGATTGTTCTGCATGGGTTCGAACCTATGCACAATTTTTAGAAGAAAGACTTGAATGTTTTAGAATTCTTAAATACGACATCGAGTTCGAGCGTTTAACAAAATCATCACCGGCTTCAACTACGTCACATAGCAGAACAAGGACGTTGAGCAGTGATGAGCTGTTGGAGCAGCTTCCGGCATTGCAGCAACTTCTTTACAGACTTGTTTGCTGTCAGCCTGAAGGAGCAGCTTTCAGCAATTATCTAATACAATATGCATTGGCCCTGATATTGAAAGAGAGCTTCAAAATATACTGTGCCCTCAATGATGGAATCATAAAACTTGTGGATGTGTTCTTCGAAATGCCGAGATTCGACGCAGTAAAGGCTTTGCATGTTTATAAAAGAGCTAGCCAACAGGCTGAACATCTTGCTGATTTCTATGAATACTGCAAGGGTTTAGACCTTGCTAGGAATTTTCAATTTCCAATTTTGAGACAGCCACCACCTTCTTTTGTGTCCACAATGGAAGAATACATTAAAGAAGCACCTATATCTCGCAACGATGTTAAGAGATTGGAATATCATGAAAATGATCAATCGCCAAAAAAAGAACCAGAACAAAAAGAAACCGAAGAACCTGAAGCAGTTGAGGAAGTCAAGGAGGAAGAACATGTTGAACAAGTTGAGGAACAAGTTGAAGAAGTGGCTGAACTTCCTCCTCTTATATCAACTGATGGTGATGATGATTTGCTGGGCCTAAATGAAATAAATCCAAAAGCACAAGAACTAGAGGACTTAAATGCTTTGGCCCTAGCAATTTTACCACCTGGTGGTGGAAAAAATTCAAATAGTCTCGCTTTGGCTAATTTAAGTGGAACTACTGGTTGGGAACTTGCACTCGTTACGACACCAAACAACCACACGAGCCAAGCGCCCGGTCGCATAATGGCTGGTGGGTTTGACAAGCTATTGCTAGACAGTTTGTACGACGACGAAAATGCACGGAGGCAACTTCAACTCCAGAATGCAGGTTATGGATATGGCGGCACTGCCACGACAATACATAATCCATTTGATAATTATAGTCACCAGGATCCATTTGCATTATCAAACAATATAGCGCCTCCGTCTAACGTACAAATGGCATCAATGGCACAACAACAGCATATGATGTTTCAACAACATCAACAGCAACACAGCATGATGATGGGACCTTATCAGCAGCAGAATCCATTAACTCAGTACCCTCAACAGATGCCAGTTATGAGTTCTTTTAATCCATTTGGAGATCCTTTACCTGTACCTAGCTATTCTTATAGTCCCATGCACCACCATCAAGGGAACTACAATATATTGTAG 1743 0.4194 MGTFQTLRKAYGALKDSTKVGLAKVNSEYKELDIAIVKATSHVEYPPKERHVRKIFYATSAHQPRADVAYCIHTLSKRLFKTRSWIVALKTLIVIHRILREGDPSFKEDLVNYSHRVQFLQISSFKDDSTPLAWDCSAWVRTYAQFLEERLECFRILKYDIEFERLTKSSPASTTSHSRTRTLSSDELLEQLPALQQLLYRLVCCQPEGAAFSNYLIQYALALILKESFKIYCALNDGIIKLVDVFFEMPRFDAVKALHVYKRASQQAEHLADFYEYCKGLDLARNFQFPILRQPPPSFVSTMEEYIKEAPISRNDVKRLEYHENDQSPKKEPEQKETEEPEAVEEVKEEEHVEQVEEQVEEVAELPPLISTDGDDDLLGLNEINPKAQELEDLNALALAILPPGGGKNSNSLALANLSGTTGWELALVTTPNNHTSQAPGRIMAGGFDKLLLDSLYDDENARRQLQLQNAGYGYGGTATTIHNPFDNYSHQDPFALSNNIAPPSNVQMASMAQQQHMMFQQHQQQHSMMMGPYQQQNPLTQYPQQMPVMSSFNPFGDPLPVPSYSYSPMHHHQGNYNIL 580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g04443 580 Pfam ANTH domain 31 309 IPR011417 GO:0005543
Vifa4g04443 580 ProSiteProfiles ENTH domain profile. 24 161 IPR013809 -
Vifa4g04443 580 FunFam Putative clathrin assembly protein 173 321 - -
Vifa4g04443 580 MobiDBLite consensus disorder prediction 317 354 - -
Vifa4g04443 580 Coils Coil 346 366 - -
Vifa4g04443 580 SMART enth_2 30 161 IPR013809 -
Vifa4g04443 580 Gene3D - 6 162 IPR008942 -
Vifa4g04443 580 FunFam Clathrin assembly protein AP180 6 161 - -
Vifa4g04443 580 SUPERFAMILY GAT-like domain 178 309 - -
Vifa4g04443 580 SUPERFAMILY ENTH/VHS domain 31 161 IPR008942 -
Vifa4g04443 580 CDD ANTH_N 32 154 - -
Vifa4g04443 580 PANTHER CLATHRIN ASSEMBLY PROTEIN 8 519 IPR045192 GO:0048268|GO:0072583
Vifa4g04443 580 Gene3D ANTH domain 174 326 IPR014712 GO:0005545|GO:0030136|GO:0030276|GO:0048268
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g04443 Vifa-Chr4 1405179779 1405183268 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g04443 K20044 - gmx:100815975 805.438
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g04443 4 1405179779 1405183268 Vifa4g04443 4 1405179779 1405183268 ECH
Vifa4g04443 4 1405179779 1405183268 Vifa1g08926 1 1414097860 1414101388 PCT