Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g08926 ATGGGAACATTTACAAGTTTCAGAAAAGCCTATGGAGCTCTCAAAGACTCCACCAAAGTTGGCCTAGCCAAAGTTAATAGCGATTACAAGGACTTGGATATTGCTATTGTGAAAGCTACCAATCATGTTGAATATCCTCCAAAAGAACGTCATGTTAGAAAAATATTCTATGCGACATCAGCGCATCAACCACGCGCAGATGTGGCATACTGCATTCATAAACTTTCCAAGAGACTTTCAAAGACGCGAAATTGGATAGTAGCTATAAAGACATTGATAGTGATTCATAGAACTTTGAGAGAGGGTGATCCTACTTTCAGAGAAGAGCTTTTGAACTACTCGCGCAGGGGACATATTCTCCAAATATCGAATTTTAAAGATGATTCAAGCCCTCTAGCTTGGGACTGTTCTGCTTGGGTTCGAACCTATGCATTATATTTAGAAGAAAGACTCGAATGTTTTAGAATCCTTAAATATGACATCGAATCAGAACGTTTAATAAAATCATCACCGGCTTCGGCTAAAGCACATAGCAGAACTCGATCGTTGGCTAATGACGATCTGTTGGAACAGCTACCAGCACTGCAACAACTTTTATTTCGCCTTATCGGTTGTCAGCCTGAAGGATGTGCATATAACAACTATCTAGTACAGTATGCATTGGCCTTGGTATTGAAAGAGAGCTTCAAAATATATTGTGCACTCAATGATGGAATCATCAATCTTGTGGACATGTTTTTTGAAACTACAAGACATGATGCAGTGAAGGCTTTAAATGTATATAAAAGAGCTGGCCAACAGGCTGAAAGTCTCGCCGATTTTTATGAATATTGCAAAGGCTTGGATCTTGCTAGGAATTTTCAGTTTCCAACGCTAAGACAGCCACCGCCATCTTTCCTTGCTACAATGGAAGAATATATTAGAGAAACTACCCCAGGCTCTGCGAACAAGAGATTGGATCAGGAAAATGTTGAATCGCCAGAAGAAGAATCAGAGACAAAAGAAGTCGAAGAGCCTCAAGAAGAAGAGAAACAAGAAGAAGAGGAAGTCAGTGAGGAGGAGGAGGAGGAAGAAGTAGTACCCGAGGAAGAAGTAGTACCCGAGGAAGAGAAGGTTGAGTCTCCTCCACTGATATCAACGGATGGTACCGATGATTTACTGGGTCTGAATGAAATAAATCCTAAAGCTCTAGAAATGGAGGATAGCAATGCAATGGCTCTTGCAATTGTACCACCTGGTGGAAATCATAATTCAAACAATCTTGCATTGAGTAACATTACGGGAACTTCTGGCTGGGAACTTTCACTGGTTACAACACCAAGTAACCATCACAGTCAACCACCGGATCGCAGAATGGCAGGTGGTTTTGACACGCTATTACTAGACAGTTTATACGAAGACGAACATGCAAGAAGGCAACTTCAACTTCAAAATGCAGGTTATGGACATGAAGAAATGAATGTACAAAGTCCATTTGATCATTATAATCAACATGACCCGTTTGCAACGTCGAAGAACATAGCACCTCCAACCAATGTTCAAATGGCAATGATGGCTCAACAACAACAGCAGCAAGAAATGATGTTCCAGCAACAACAAATGATGTACCCACAACATCAACATCAGCATCACAACATGGAAATGGTGCTTCACCAGCAACAACCTCATGGTCAATACCCTCAACACCCTCAACAGATGCAGATGATGAGTAATCATAATCCATTTGGAGATCCTTTACCTGTTCCTAATTATCCTCATAACTCAACGCATCAGCAAGGGAATTACAATTTATTGTAG 1797 0.4079 MGTFTSFRKAYGALKDSTKVGLAKVNSDYKDLDIAIVKATNHVEYPPKERHVRKIFYATSAHQPRADVAYCIHKLSKRLSKTRNWIVAIKTLIVIHRTLREGDPTFREELLNYSRRGHILQISNFKDDSSPLAWDCSAWVRTYALYLEERLECFRILKYDIESERLIKSSPASAKAHSRTRSLANDDLLEQLPALQQLLFRLIGCQPEGCAYNNYLVQYALALVLKESFKIYCALNDGIINLVDMFFETTRHDAVKALNVYKRAGQQAESLADFYEYCKGLDLARNFQFPTLRQPPPSFLATMEEYIRETTPGSANKRLDQENVESPEEESETKEVEEPQEEEKQEEEEVSEEEEEEEVVPEEEVVPEEEKVESPPLISTDGTDDLLGLNEINPKALEMEDSNAMALAIVPPGGNHNSNNLALSNITGTSGWELSLVTTPSNHHSQPPDRRMAGGFDTLLLDSLYEDEHARRQLQLQNAGYGHEEMNVQSPFDHYNQHDPFATSKNIAPPTNVQMAMMAQQQQQQEMMFQQQQMMYPQHQHQHHNMEMVLHQQQPHGQYPQHPQQMQMMSNHNPFGDPLPVPNYPHNSTHQQGNYNLL 598
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g08926 598 Coils Coil 336 357 - -
Vifa1g08926 598 ProSiteProfiles ENTH domain profile. 24 161 IPR013809 -
Vifa1g08926 598 MobiDBLite consensus disorder prediction 555 598 - -
Vifa1g08926 598 SUPERFAMILY ENTH/VHS domain 30 162 IPR008942 -
Vifa1g08926 598 MobiDBLite consensus disorder prediction 584 598 - -
Vifa1g08926 598 Gene3D - 5 161 IPR008942 -
Vifa1g08926 598 MobiDBLite consensus disorder prediction 325 369 - -
Vifa1g08926 598 SMART enth_2 30 161 IPR013809 -
Vifa1g08926 598 SUPERFAMILY GAT-like domain 178 309 - -
Vifa1g08926 598 Gene3D ANTH domain 173 326 IPR014712 GO:0005545|GO:0030136|GO:0030276|GO:0048268
Vifa1g08926 598 MobiDBLite consensus disorder prediction 555 572 - -
Vifa1g08926 598 FunFam Putative clathrin assembly protein 173 322 - -
Vifa1g08926 598 FunFam Clathrin assembly protein AP180 6 161 - -
Vifa1g08926 598 Pfam ANTH domain 31 309 IPR011417 GO:0005543
Vifa1g08926 598 CDD ANTH_N 32 154 - -
Vifa1g08926 598 PANTHER CLATHRIN ASSEMBLY PROTEIN 7 525 IPR045192 GO:0048268|GO:0072583
Vifa1g08926 598 MobiDBLite consensus disorder prediction 310 388 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g08926 Vifa-Chr1 1414097860 1414101388 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g08926 K20044 - gmx:100786060 832.787
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g08926 1 1414097860 1414101388 Vifa1g08926 1 1414097860 1414101388 ECH
Vifa4g04443 4 1405179779 1405183268 Vifa1g08926 1 1414097860 1414101388 PCT