LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vifa4g04438	ATGGCCACCGCCGACCCAATCCCGAACGGAACTTTACAATTCCAACCACCAGTCGACCCAATTTCGGACGCCGTCAACGCTCCGACCACCGAGGAAACAGATTCCGAAGAGAAGAAATGGCCGGGGTGGCCCGGTCATTGCGTTTTCCGGCTGATTGTTCCGGTTCTTAAAGTCGGGATCATAATAGGCCGTAAAGGGGAGCTTATCAAGAAGACTTGTGAAGAGACTCGTGCTCGGATTCGTGTTCTCGATGCTCCACTTGGTACTCCTGATCGAATTGTGCTTATATCGGGGAAGGAAGATTTGGACGCGCCTCTTTCTCCTGCAATGGATGCTGTAATAAAGATTTTTAAACGTGTCTCCGGATTAAGTGAAACTGATGACAATAATGCAACATCAGGAGCTGCATTTTGCTCCATCCGTTTATTGGTGGCCTCAACGCAAGCTATCAATTTGATAGGAAAGCAGGGTTCGTCGATTAAAACTATACAAGAGAATACCGGTGCTTCTGTTAGAGTATTGGCGGGAGAGGAGCTTCCATCGTATGTTGGTGCCGATGAAAGGATTGTAGAACTGCAGGGCGAAACCTTAAAGGTCCTTAAAGGTCTGGAAGCAGTAGTCGGGCACCTGAGGAAGTTTTTGGTTGATCATAGTGTTCTTCCCCTATATGAGAAAACTTGCAATGCAACAATCTCCCAAGACCGCCAGACAGATTCCTGGGCAGAGAAACCCTCACTGCGTAGTGCTTCGCAACCTAGCATTGTTGCTGATATTCCTCCAACAAAAAGGGATTATTTCTTTGCTGACCGTGAAAGTCAATTCGATTCATTGCTCTCTTCCTCAACAATGTCGCAATATGGACAAGATTCTTCAATCTCTGGTCTTCGTTCTTCGGCATTTAATCGTGCTAGTGCTTCCATTGTTACTACAGTAATACAAACAATGCAAATACCACTTTCCTATGCAGAGGACATAATTGGTGTTCAAGGGACTAATATCGATTACATTCGCCGTACTAGTGGTGCCATATTGACTGTGCAGGAGAGCAGAGTGCCAGATGAAATCATTGTGGAAATAAAAGGCACCTCCTCTGAAGTTCAAACAGCACAACAATTGATTCAGGAAGTCATAGCTAATCACAACGAAACTATCGCTAGTAGTTATGGCAGGTTAGATTCAGGGCTGAGGTCTTCTTACTCTCAGTTGAGCAACTCTTCCTATCCCTCATCTTCGTTGCCATCATCGCAATCCTACAATGGGTATGGATCTTCCGGTCTAGGAGACTATAGTACTTTCAGACTTTAA	1305	0.4536	MATADPIPNGTLQFQPPVDPISDAVNAPTTEETDSEEKKWPGWPGHCVFRLIVPVLKVGIIIGRKGELIKKTCEETRARIRVLDAPLGTPDRIVLISGKEDLDAPLSPAMDAVIKIFKRVSGLSETDDNNATSGAAFCSIRLLVASTQAINLIGKQGSSIKTIQENTGASVRVLAGEELPSYVGADERIVELQGETLKVLKGLEAVVGHLRKFLVDHSVLPLYEKTCNATISQDRQTDSWAEKPSLRSASQPSIVADIPPTKRDYFFADRESQFDSLLSSSTMSQYGQDSSISGLRSSAFNRASASIVTTVIQTMQIPLSYAEDIIGVQGTNIDYIRRTSGAILTVQESRVPDEIIVEIKGTSSEVQTAQQLIQEVIANHNETIASSYGRLDSGLRSSYSQLSNSSYPSSSLPSSQSYNGYGSSGLGDYSTFRL	434

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vifa4g04438	434	SUPERFAMILY	Eukaryotic type KH-domain (KH-domain type I)	40	100	IPR036612	GO:0003723
	Vifa4g04438	434	CDD	KH-I_PEPPER_rpt2_like	141	211	-	-
	Vifa4g04438	434	PANTHER	KH DOMAIN CONTAINING RNA BINDING PROTEIN	35	403	-	-
	Vifa4g04438	434	MobiDBLite	consensus disorder prediction	1	39	-	-
	Vifa4g04438	434	Gene3D	K Homology domain, type 1	309	385	IPR036612	GO:0003723
	Vifa4g04438	434	ProSiteProfiles	Type-1 KH domain profile.	137	206	-	-
	Vifa4g04438	434	CDD	KH-I_PEPPER_rpt1_like	46	114	-	-
	Vifa4g04438	434	SUPERFAMILY	Eukaryotic type KH-domain (KH-domain type I)	305	379	IPR036612	GO:0003723
	Vifa4g04438	434	Pfam	KH domain	313	375	IPR004088	GO:0003723
	Vifa4g04438	434	Pfam	KH domain	140	201	IPR004088	GO:0003723
	Vifa4g04438	434	Pfam	KH domain	49	101	IPR004088	GO:0003723
	Vifa4g04438	434	SUPERFAMILY	Eukaryotic type KH-domain (KH-domain type I)	130	217	IPR036612	GO:0003723
	Vifa4g04438	434	ProSiteProfiles	Type-1 KH domain profile.	46	113	-	-
	Vifa4g04438	434	Gene3D	-	46	213	-	-
	Vifa4g04438	434	ProSiteProfiles	Type-1 KH domain profile.	310	373	-	-
	Vifa4g04438	434	SMART	kh_6	136	211	IPR004087	GO:0003676
	Vifa4g04438	434	SMART	kh_6	309	378	IPR004087	GO:0003676
	Vifa4g04438	434	SMART	kh_6	45	118	IPR004087	GO:0003676

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vifa4g04438	Vifa-Chr4	1401817937	1401823119	Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vifa4g04438	K21444		-	gmx:100802089	596.275

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Vifa4g04438	4	1401817937	1401823119	Vifa4g04438	4	1401817937	1401823119	ECH
	Vifa4g04438	4	1401817937	1401823119	Vifa1g08919	1	1413112879	1413118354	PCT