Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g08919 ATGGCCACCATCGAACCACCTCAAAACGGCACCGCCACCGCCACCGCCACCGCCACCGCCACCGCCACAAACCCTCTCCCACCGGCCAATCCCTCCGCCGCACAACCCCTCACCACCGAAGCCGACGCAATCGCCGTTAACTCATCCTCAATCGTCAACGAATCGGCTCAAGAGCCGGGGCCGGAGACGGTAACCGAAACCGGAATAGAACCCGCTGTCACTCCTCCGGAGAAGAGATGGTCAGGTTGGCCGGGTGACTGCGTGTTCCGTCTTATAGTTCCTGTTGGTAAGGTTGGTAGCATCATTGGACGTAAGGGAGAACTCATCAAGAAGCTCTGTGAAGAAACTAAAGCTCGTGTTCGTGTTCTTGATGCCGATCTCGGTACTCTTGATCGAGTTATACTCATATCAGGGAAGGAAGAGCTAGAAGCAGCTATATCCCCTGCAATGGATGCTGCAATAAGGATATTCAAACGCGTCTCTGGATTATCTGAAATTGACAGTGAAATTAAAGGATCTGCTGGGGTTACAGTTTGTTCCATTCGATTATTGGTGCCATCAACACAGGCTATCAGTTTGATTGGAAAGCAAGGGTCACTAATCAAATCCATACAGGAGAGTTCTGGTGCCTCTGTTAGAGTACTGTCAGTAGATGAGGTGCAATATTTTGCTACTGCGGAAGAGAGGATTGTAGACCTGCAGGGAGAAGCCTTGAAGGTCCTTAAAGCTCTGGAAGCCGTGATTGGCCATCTGAGGAAGTTTTTGGTTGATCACAGCGTTCTCCCCCTATTTGAGAAAATTTACAATGCGTCTATCCCACAACAAGACCGTCAAGCAGAGATCTGGTCTGACAAGCCGTCACAGCATACCATTTCACAAACTAGCATGTTTTCTGATCCACTTCCATCAAAAAGGGATTCTGTGTTCGCTGAGCGTGAAAGTCATTTGGACTCACTACTCTCATCCTCCACTATGTCTATCTATGGGAAAGATTCTTCTCTTTCTGGTATCCGTTCTTCAACTCTTAGTCGTGTTGGGGCTCCTATTGTTACGACGGTAATACAAACAATGCAAATACCACTATCCTATGCGGAGGACATCATTGGCATTCAAGGGACAAATATAGATTATATTCGCCGCACTAGTGGAGCCATATTGACTGTGCAGGAGAGCAGGGTGCCTGATGAAATTGTTGTGGAAATAAAAGGAACCTCATCCCAGGTTCAAACGGCTCAGCAATTGATTCAGGAAGTTATAAGCAGTCACAGAGAACCTGTCACCAACAGCTACGGGAGGTTGGATGCGAGCAGAATGGATGTCGGTCCAAGGTCATATTCTCAGTCTTCATACTCTCAGTTGGGCAATACATCACGCATCCCATCTTCTTCATTGTCCTCGCAGCAATACTCAAGCTATGGAGCATCTGGTTTAGGAGACTATAGTACTTTCAGGCTTTAA 1458 0.4781 MATIEPPQNGTATATATATATATNPLPPANPSAAQPLTTEADAIAVNSSSIVNESAQEPGPETVTETGIEPAVTPPEKRWSGWPGDCVFRLIVPVGKVGSIIGRKGELIKKLCEETKARVRVLDADLGTLDRVILISGKEELEAAISPAMDAAIRIFKRVSGLSEIDSEIKGSAGVTVCSIRLLVPSTQAISLIGKQGSLIKSIQESSGASVRVLSVDEVQYFATAEERIVDLQGEALKVLKALEAVIGHLRKFLVDHSVLPLFEKIYNASIPQQDRQAEIWSDKPSQHTISQTSMFSDPLPSKRDSVFAERESHLDSLLSSSTMSIYGKDSSLSGIRSSTLSRVGAPIVTTVIQTMQIPLSYAEDIIGIQGTNIDYIRRTSGAILTVQESRVPDEIVVEIKGTSSQVQTAQQLIQEVISSHREPVTNSYGRLDASRMDVGPRSYSQSSYSQLGNTSRIPSSSLSSQQYSSYGASGLGDYSTFRL 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g08919 485 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 80 141 IPR036612 GO:0003723
Vifa1g08919 485 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 177 260 IPR036612 GO:0003723
Vifa1g08919 485 CDD KH-I_PEPPER_rpt2_like 182 252 - -
Vifa1g08919 485 CDD KH-I_PEPPER_rpt1_like 86 152 - -
Vifa1g08919 485 SMART kh_6 85 158 IPR004087 GO:0003676
Vifa1g08919 485 SMART kh_6 177 252 IPR004087 GO:0003676
Vifa1g08919 485 SMART kh_6 351 420 IPR004087 GO:0003676
Vifa1g08919 485 Gene3D K Homology domain, type 1 351 425 IPR036612 GO:0003723
Vifa1g08919 485 MobiDBLite consensus disorder prediction 1 78 - -
Vifa1g08919 485 MobiDBLite consensus disorder prediction 441 472 - -
Vifa1g08919 485 ProSiteProfiles Type-1 KH domain profile. 86 153 - -
Vifa1g08919 485 ProSiteProfiles Type-1 KH domain profile. 178 247 - -
Vifa1g08919 485 ProSiteProfiles Type-1 KH domain profile. 352 415 - -
Vifa1g08919 485 Gene3D - 86 255 - -
Vifa1g08919 485 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 75 446 - -
Vifa1g08919 485 MobiDBLite consensus disorder prediction 426 472 - -
Vifa1g08919 485 MobiDBLite consensus disorder prediction 1 62 - -
Vifa1g08919 485 Pfam KH domain 355 417 IPR004088 GO:0003723
Vifa1g08919 485 Pfam KH domain 89 146 IPR004088 GO:0003723
Vifa1g08919 485 Pfam KH domain 181 247 IPR004088 GO:0003723
Vifa1g08919 485 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 348 421 IPR036612 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g08919 Vifa-Chr1 1413112879 1413118354 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g08919 K21444 - gmx:100815466 628.246
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g08919 1 1413112879 1413118354 Vifa1g08919 1 1413112879 1413118354 ECH
Vifa4g04438 4 1401817937 1401823119 Vifa1g08919 1 1413112879 1413118354 PCT