Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g04431 ATGCGCTCAGGAGGTTGTGCATTGCAGCAGACCCTCACATCAGAGGCTGCTTCAGTTTTGAAGCATTCTCTTGTGTTGGCTAGAAGGAGAGGCCATCCACAGGTCACTCCTCTACATGTAGCAATCACTTTACTAACCTTAAGGCTAAGTTCTTTCAAAAGGGCTTGTCTTAAATCTCATCAACCACATCACCAAACTTCATATCATCATCATCCTCTTCAATCTCGAGCTCTTGAGCTTTGTTTCAATGTAGCTCTTAATAGGCTCCCGACAACACCGTCTCCTTTGATTCACTCTCAACCTTCACTTTCCAATGCTCTCATCGCGGCATTGAAAAGAGCTCAGGCTCATCAAAGACGAGGCTCCATAGAGCAGCAGCAGCAGCAAACGGTTCTTACCGTGAAAGTTGAGCTTGAACAGCTTATTATATCGATTCTCGATGACCCTAGTGTTAGTAGGGTTATGAGAGAAGCTGGATTCTCTAGTACTCTTGTTAAGAACAACTTAGAGGATTCTTTTTCGCCTTCTAATTCAGTTTTTAAATGTTATAATAGTTCTGGTGGTGGCGTGTTTTCGTCTCCTTGTTCACCTTCTACTAGTGAGAATCATAGAGAAAACATTAACCTTGGAAGTTTCAGACAGAACCATTTCATGGCTTCTACTAATGCTAACTACAGTTCTTCTGAGTTTAACTCACTTCTCTTTTCTCCACCAAAGAGAACTGAGTTGTTGACTACTTCAAATGGACTTGGCTTGACCCTTCATTCTTCCAGTGTTCTTGATTCAAGGATAAGCATCTCTCAGAATCCATCTCCTATGATGGAAACAAAGCCATTTAGTAGCGATAAGGAGCATGAGGATAAGCTTAATTGCTGTGAAGAATGTGCATCCAACTATGAAAAAGAAGCTCAGTTTCTCAAACCTCAACAGAAGAAAACATTGCCTTTCTGGCTTCAGTCTCATGGCACAGAAGAACCAAAAAAGGATGGATTAACCGAGTTGAAACGTAAATGGAATAGACTATGCCATTGTCTCCACCAAAACAAACAGCAACAGAACCACTGGAATTGGAGCAACAACAATCACAGTTCAAACCACAATAACACATCAAGTTCCATATCTAATAACTCCAATCATACACCTCGATTTCGTCGCCAACAATCGTGCATCATCGAGTTCAACCTCAACGATAAAAGGCAAGCAGCCAAGCCATTCTTTGATTCTTTCGAAAGCATGGAAGCTAAAGAAGTAAAGATCACTCTTGCACTTGGAAATGGTAGTGATTCAAGTGAAAAGGTGATACAACAAACTCATGTTTGTATTTGTAAACTATTGGAAGAGAATGTGCCATGGCAATCCGAAACAGTTTCTTCAATAGCAAAGGCCTTGATTGATTATACCAAATTATCAAAACAAAGTGAAATCACATTCACATGGTTATTTCTACAAGGCAATGATTTCATAGGCAAAAGAAGATTAGCACTTGCTATAGCAGAATCAGTTTTTGGTTCAGCTGATTTGGTTCTTCACATGGACATGCTAAAAAAGGAAACTTTAACAACCCCATTTTCTGAAATGCTATTAGGAGCATTGAGAACACATCAACAGCTTGTGGTTTTAATAGAAAATGTTGATTCTGCTGATACCCATTTCCTGAAATTTCTCTCAAATGCATATGAAAAAGGAAAGTTTGAAACTTTAAGCAGCAAAGAGGGGAATTTAGGTCAAATTATATTCATACTAACAAATGGAGGATCCACAAGCATTGAAGAGAAGAAGAACAAAGCTGTAATCAATTTGTTGTGGCAGATAACTGAAACTAAACCTAATTTTTACAGCCCCAAGAGAAAATCTGAATTGGATCTGTTTTCCAAAATCAAGAACCCTAGAATTGAAGAAAATCAAAAGGGGTTGTTGATTTCTGAACAAGGAAGCAAAAAGACAGAATTTTTAAGACAATCAAGCTTTAACAGTAACACTCTTGATCTGAACACGAAAGCTGAAGAAGAAGAAGAAGAAGAAGTTGAAGATAGCCCTAATCCAAGTGATTTAACTAGAGAAACTGTAAATGATCCATTGAACTCAAAAGGGTTTCTTGATTCAATTGAGAACAGGTTTGAGTTCAACACAAATTCAGACAAGGACAGAGAAAAGACAGAGTTTTTTCTGTCTAAGATGAAAGGGTCATTTGAAGAGGTTTATGGTAAAAAGAATGTGGTGAATTTTAGTGTAGATGAGAAAGTGATTGAGAACATGTGTGTTGGGTGTTGTTTTTTTACTAACAAAATGTTTGAGAAATGGCTGAAAGACATTTTTCAAAGGAGTTTAGAGACAGTTAACTTTGGAGGGAAGGAGGGTATACTTTTTAGACTTTGTTTGGAGGGTGGTGATAGAAATTGGGACAGTGGATTTAATGGTTCTTGTTTGCCTAAGAGTATCAAAGTTGATTGCTTTATGGAGTAA 2463 0.3808 MRSGGCALQQTLTSEAASVLKHSLVLARRRGHPQVTPLHVAITLLTLRLSSFKRACLKSHQPHHQTSYHHHPLQSRALELCFNVALNRLPTTPSPLIHSQPSLSNALIAALKRAQAHQRRGSIEQQQQQTVLTVKVELEQLIISILDDPSVSRVMREAGFSSTLVKNNLEDSFSPSNSVFKCYNSSGGGVFSSPCSPSTSENHRENINLGSFRQNHFMASTNANYSSSEFNSLLFSPPKRTELLTTSNGLGLTLHSSSVLDSRISISQNPSPMMETKPFSSDKEHEDKLNCCEECASNYEKEAQFLKPQQKKTLPFWLQSHGTEEPKKDGLTELKRKWNRLCHCLHQNKQQQNHWNWSNNNHSSNHNNTSSSISNNSNHTPRFRRQQSCIIEFNLNDKRQAAKPFFDSFESMEAKEVKITLALGNGSDSSEKVIQQTHVCICKLLEENVPWQSETVSSIAKALIDYTKLSKQSEITFTWLFLQGNDFIGKRRLALAIAESVFGSADLVLHMDMLKKETLTTPFSEMLLGALRTHQQLVVLIENVDSADTHFLKFLSNAYEKGKFETLSSKEGNLGQIIFILTNGGSTSIEEKKNKAVINLLWQITETKPNFYSPKRKSELDLFSKIKNPRIEENQKGLLISEQGSKKTEFLRQSSFNSNTLDLNTKAEEEEEEEVEDSPNPSDLTRETVNDPLNSKGFLDSIENRFEFNTNSDKDREKTEFFLSKMKGSFEEVYGKKNVVNFSVDEKVIENMCVGCCFFTNKMFEKWLKDIFQRSLETVNFGGKEGILFRLCLEGGDRNWDSGFNGSCLPKSIKVDCFME 820
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g04431 820 Gene3D - 426 633 IPR027417 -
Vifa4g04431 820 SUPERFAMILY Double Clp-N motif 12 169 IPR036628 -
Vifa4g04431 820 PANTHER CHAPERONE PROTEIN CLPD, CHLOROPLASTIC 1 206 - -
Vifa4g04431 820 MobiDBLite consensus disorder prediction 682 696 - -
Vifa4g04431 820 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 443 583 IPR027417 -
Vifa4g04431 820 Gene3D - 9 173 IPR036628 -
Vifa4g04431 820 ProSiteProfiles Clp repeat (R) domain profile. 8 176 IPR004176 -
Vifa4g04431 820 MobiDBLite consensus disorder prediction 354 380 - -
Vifa4g04431 820 MobiDBLite consensus disorder prediction 661 696 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g04431 Vifa-Chr4 1399406173 1399409740 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g04431 - - aprc:113853131 912.524
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g04431 4 1399406173 1399409740 Vifa4g04431 4 1399406173 1399409740 ECH
Vifa4g04431 4 1399406173 1399409740 Vifa1g08909 1 1410455935 1410459721 PCT