Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g04421 ATGATGTACGAACAGCAATCGGTGAAGAGAACAACGTATAGTAATGATTCGAATTCGATAGAGGAAACTGAGAGACTTGAAATAGTTAACTTGAGTGGCTTGTCATTAGACTCTCTTCCTAACCCTTCTCTCGAGTTAGCTTCCATTTGCAAGTTAGACCTATCCAACAACAATCTTCAGAATATTCCGGAATCATTGACGGCGAAATTGGTGAACACGGTGGTGTTGGACGTGCACTCAAACCAGCTGAGAACCCTCCCAAACTCCATTGGGTGCCTCTCAAAGCTCAAGATTCTGAATGTCTCTGGCAACCTCATCCAATACCTCCCGAAAACACTAGAGAATTGCAGAGCCTTAGAAGATTTGAATTTAAACTTCAACAAGTTGATTCAGTTACCAGAAAACCTAGGGTTTGGGCTAATAAACCTCAAGAAACTATCAATCAACTCCAACAAACTTCTCTCCCTTCCACGCTCCATTTCTTATCTCATATCTCTCAAGAATCTCGACGCACGTCTCAACTGTCTCAGATCTCTCCCGGAAGATCTCGAGAATCTCATCAACCTTGAAACCCTAAACGTGAGTCAGAATTTTCATTTCTTGGATACCATCCCCTACTCCATAGGACTTCTGTTGTCCCTCGTTGAACTCGACATCAGCTACAACAAGATCAAATCCTTACCAGACTCCATTGGTGGTCTCACTAAGCTTCAAAAACTAAGTGTGGAAGGGAACCCTCTTACTTCACCACCACCGGAAGTTATGGAGCTAGGACTGCATGCAGTGAAGGAGTATCTCGGAAACAAGATGAACGCTGCTAATCAGAGTCCGACTAAGAGTCCAACTAAGAAGAAGTCGTGGGTTGGACGTTTGGTTAAGTATGGAACCTTCAATGTCAGAAATGCACCTCGTGAAGAACGTGAAGCTTTCATCGTCTCAGATGATGATAGATCTATCGATAGTGTTGCTACTTCTCGCCACACGGGGATGTTTTCCCCGCGTCGTCTCTTCTCCGGTCGGAATTACTTTAGCCATTGA 1038 0.4403 MMYEQQSVKRTTYSNDSNSIEETERLEIVNLSGLSLDSLPNPSLELASICKLDLSNNNLQNIPESLTAKLVNTVVLDVHSNQLRTLPNSIGCLSKLKILNVSGNLIQYLPKTLENCRALEDLNLNFNKLIQLPENLGFGLINLKKLSINSNKLLSLPRSISYLISLKNLDARLNCLRSLPEDLENLINLETLNVSQNFHFLDTIPYSIGLLLSLVELDISYNKIKSLPDSIGGLTKLQKLSVEGNPLTSPPPEVMELGLHAVKEYLGNKMNAANQSPTKSPTKKKSWVGRLVKYGTFNVRNAPREEREAFIVSDDDRSIDSVATSRHTGMFSPRRLFSGRNYFSH 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g04421 345 SMART LRR_typ_2 140 162 IPR003591 -
Vifa4g04421 345 SMART LRR_typ_2 93 116 IPR003591 -
Vifa4g04421 345 SMART LRR_typ_2 70 92 IPR003591 -
Vifa4g04421 345 SMART LRR_typ_2 163 186 IPR003591 -
Vifa4g04421 345 SMART LRR_typ_2 46 69 IPR003591 -
Vifa4g04421 345 SMART LRR_typ_2 117 139 IPR003591 -
Vifa4g04421 345 SMART LRR_typ_2 234 257 IPR003591 -
Vifa4g04421 345 SMART LRR_typ_2 211 233 IPR003591 -
Vifa4g04421 345 PANTHER - 26 137 - -
Vifa4g04421 345 Gene3D Ribonuclease Inhibitor 2 137 IPR032675 -
Vifa4g04421 345 SUPERFAMILY L domain-like 20 256 - -
Vifa4g04421 345 ProSiteProfiles Leucine-rich repeat profile. 48 69 IPR001611 GO:0005515
Vifa4g04421 345 ProSiteProfiles Leucine-rich repeat profile. 213 234 IPR001611 GO:0005515
Vifa4g04421 345 SMART LRR_bac_2 211 230 - -
Vifa4g04421 345 SMART LRR_bac_2 140 159 - -
Vifa4g04421 345 SMART LRR_bac_2 116 135 - -
Vifa4g04421 345 SMART LRR_bac_2 163 182 - -
Vifa4g04421 345 SMART LRR_bac_2 46 65 - -
Vifa4g04421 345 SMART LRR_bac_2 93 112 - -
Vifa4g04421 345 Gene3D Ribonuclease Inhibitor 138 273 IPR032675 -
Vifa4g04421 345 Pfam Leucine rich repeat 51 106 IPR001611 GO:0005515
Vifa4g04421 345 Pfam Leucine rich repeat 211 247 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g04421 Vifa-Chr4 1396266118 1396267251 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g04421 52 255 Receptor kinase-like Gene Family AT5G51350 34.272 7.28e-15 73.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g04421 - - cam:101513208 489.189
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g04421 4 1396266118 1396267251 Vifa4g04421 4 1396266118 1396267251 ECH
Vifa4g04421 4 1396266118 1396267251 Vifa1g08875 1 1404826965 1404830001 PCT