Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g08875 ATGTTCGAACAGCAACACTTTCAACTTCACAGTCACCGGAATCAGCTTACGGTGAAGATGAACAATAGAGTGAAAAGAAGAGAAATGAAAAAGCCTAAAGAAGAAGAGAAGCTTCAAGTTATGGACTTGAGTGGCATGTCCTTGGACTCACTTCCTAAATCTTTGCTTGATTTAGCCATCATTTCTAAGCTTGACCTATCTAATAACAATCTAAAGAATATTCCAGAGTCATTAACTGCAAGGTTACTGAGCTTAGAAATGTTAGACGTGCACTCCAACCAGCTCAAATCTCTCCCAAATTCCATTGGTTGTCTCTCCAAGCTCCAAGTTTTGAATGTCTCTGCCAACTTCATTGAATCTCTTCCTGCAACCATTGAGAATTGCAGAGCTTTGGAAGAATTGAATGTCAACTTCAACATGTTGAGCAAGCTCCCAGACACAATAGGCTTTGAGCTCATAAAACTCAAGAAGCTTGCAGTCAACTCCAACAAATTGGTTTTTCTTCCTAGCTCCACCTCTCACCTTATGGCTCTCAAGGTTCTTGACGTCCGTTTGAACTGTCTCAGGAGTCTCCCCAACAATCTCGAGAACCTCATCAATCTTGAAACCCTAAATGTGAGTCAGAACTTTCAATACTTGGAATCCCTGCCATACTCCATAGGGCTCCTCTTGTCTCTGGTTGAATTGGACATTAGCTACAACAGTATCAAAACATTGCCTGACTCCATTGGGTGCCTCCAAAAGCTTCAAAAGCTATGTGTGGAGGGAAACCCGCTCATTTCGCCTCCACCAGAGGTGGTGGAACAGGGTTTACATGTGGTGAAGGAGTACATGAGCCACAAAATGAATTCGAGTCATAAAGTCTCAACTAAGAAGAAATGGTGGATGGTGAAATGTGGAACCTTCAATGGACACAATAGAAATGGGAAACAAACAGAACACAAAGGTTTTAGCATGCTTCAATATCAACCAATGAATGGTCTTGCAACACCAGGCTTCATGGAAAAGTTGTTACCTCTTCGCCTATTCTCACCACGCCATTCTTTCAATTGA 1053 0.4198 MFEQQHFQLHSHRNQLTVKMNNRVKRREMKKPKEEEKLQVMDLSGMSLDSLPKSLLDLAIISKLDLSNNNLKNIPESLTARLLSLEMLDVHSNQLKSLPNSIGCLSKLQVLNVSANFIESLPATIENCRALEELNVNFNMLSKLPDTIGFELIKLKKLAVNSNKLVFLPSSTSHLMALKVLDVRLNCLRSLPNNLENLINLETLNVSQNFQYLESLPYSIGLLLSLVELDISYNSIKTLPDSIGCLQKLQKLCVEGNPLISPPPEVVEQGLHVVKEYMSHKMNSSHKVSTKKKWWMVKCGTFNGHNRNGKQTEHKGFSMLQYQPMNGLATPGFMEKLLPLRLFSPRHSFN 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g08875 350 SUPERFAMILY L domain-like 37 264 - -
Vifa1g08875 350 SMART LRR_typ_2 105 128 IPR003591 -
Vifa1g08875 350 SMART LRR_typ_2 58 81 IPR003591 -
Vifa1g08875 350 SMART LRR_typ_2 223 246 IPR003591 -
Vifa1g08875 350 SMART LRR_typ_2 152 174 IPR003591 -
Vifa1g08875 350 SMART LRR_typ_2 175 198 IPR003591 -
Vifa1g08875 350 SMART LRR_typ_2 82 104 IPR003591 -
Vifa1g08875 350 SMART LRR_typ_2 129 151 IPR003591 -
Vifa1g08875 350 ProSiteProfiles Leucine-rich repeat profile. 84 105 IPR001611 GO:0005515
Vifa1g08875 350 Pfam Leucine rich repeat 62 116 IPR001611 GO:0005515
Vifa1g08875 350 PANTHER - 82 270 - -
Vifa1g08875 350 Gene3D Ribonuclease Inhibitor 2 150 IPR032675 -
Vifa1g08875 350 Gene3D Ribonuclease Inhibitor 151 279 IPR032675 -
Vifa1g08875 350 ProSiteProfiles Leucine-rich repeat profile. 225 246 IPR001611 GO:0005515
Vifa1g08875 350 SMART LRR_bac_2 223 242 - -
Vifa1g08875 350 SMART LRR_bac_2 105 124 - -
Vifa1g08875 350 SMART LRR_bac_2 58 77 - -
Vifa1g08875 350 SMART LRR_bac_2 82 101 - -
Vifa1g08875 350 SMART LRR_bac_2 128 147 - -
Vifa1g08875 350 SMART LRR_bac_2 175 194 - -
Vifa1g08875 350 SMART LRR_bac_2 246 265 - -
Vifa1g08875 350 SMART LRR_bac_2 198 219 - -
Vifa1g08875 350 SMART LRR_bac_2 152 171 - -
Vifa1g08875 350 ProSiteProfiles Leucine-rich repeat profile. 60 81 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g08875 Vifa-Chr1 1404826965 1404830001 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g08875 50 280 Receptor kinase-like Gene Family AT3G56370 30.980 3.23e-12 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g08875 - - lja:Lj6g3v1315120.1 485.723
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g08875 1 1404826965 1404830001 Vifa1g08875 1 1404826965 1404830001 ECH
Vifa4g04421 4 1396266118 1396267251 Vifa1g08875 1 1404826965 1404830001 PCT