LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vifa4g04402	ATGGCATCTAAGTTACAACTTTTTGGCCTTCTTTTCTTATCCTTTTTGGCAGCAACATCTGCTAGTAATAATTTCAATCAATACTTTGATATAACATGGGGAAATGGCCGTGGCAAAATCCTCAACAACGGTCAACTTCTTACACTGTCTTTAGACAAAGCTTCTGGCTCTGGCTTTCGTTCCAAAAATGAATACTTGTTTGGAAAAATCGACATGCAACTAAAGCTTGTGCCCGGTAACTCTGCCGGAACAGTCACAACATATTATCTATCTTCTCTTGGAGATTCTCATGATGAAATAGATTTTGAATTTCTTGGTAACTTAAGTGGTGATCCTTATATTGTTCATACAAATATTTACTCACAAGGGAAAGGAAACAAAGAACAACAGTTTTATCTGTGGTTTGATCCCACCAAAGACTTTCACACTTATTCCATTCTTTGGAATCCTCAAAGCATCATATTTTCTGTGGATGGGACACCATTAAGAGAATTCAAGAATTTGGAATCAAAAGGTATTCCTTTTCCAAGAAGCCAAGCAATGAGTATATATTCAAGTCTTTGGGATGCTGATAATTGGGCCACAAGGGGAGGCCTGGTGAAAACAGATTGGGCCCAAGCCCCATTCACAGCTTCATATGGAAATTTCAACATTCAAGCTTGTGTTTGGACTTCTTCTTCAGGCTCATCTTGCTCTTCCAAAACTCAATCTTCAAGTAATCAATCATGGATGAAACAGTCTTTGGATTCAACTGGCCATGCTAGGATTCAATGGGTGCAAAAGAATTACATGATTTACAATTATTGCACTGATACTAAAAGATTTCCTCAAGGTCTACCTCCTGAATGCTCACTTGCTTGA	861	0.381	MASKLQLFGLLFLSFLAATSASNNFNQYFDITWGNGRGKILNNGQLLTLSLDKASGSGFRSKNEYLFGKIDMQLKLVPGNSAGTVTTYYLSSLGDSHDEIDFEFLGNLSGDPYIVHTNIYSQGKGNKEQQFYLWFDPTKDFHTYSILWNPQSIIFSVDGTPLREFKNLESKGIPFPRSQAMSIYSSLWDADNWATRGGLVKTDWAQAPFTASYGNFNIQACVWTSSSGSSCSSKTQSSSNQSWMKQSLDSTGHARIQWVQKNYMIYNYCTDTKRFPQGLPPECSLA	286

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vifa4g04402	286	ProSiteProfiles	Glycosyl hydrolases family 16 (GH16) domain profile.	13	213	IPR000757	GO:0004553\|GO:0005975
	Vifa4g04402	286	Pfam	Glycosyl hydrolases family 16	26	205	IPR000757	GO:0004553\|GO:0005975
	Vifa4g04402	286	CDD	GH16_XET	21	283	IPR016455	GO:0010411\|GO:0016762\|GO:0042546
	Vifa4g04402	286	PRINTS	Glycosyl hydrolase family 16 signature	57	75	IPR008264	GO:0004553\|GO:0005975
	Vifa4g04402	286	PRINTS	Glycosyl hydrolase family 16 signature	133	150	IPR008264	GO:0004553\|GO:0005975
	Vifa4g04402	286	PRINTS	Glycosyl hydrolase family 16 signature	115	128	IPR008264	GO:0004553\|GO:0005975
	Vifa4g04402	286	PIRSF	EndGlu_transf	1	286	IPR016455	GO:0010411\|GO:0016762\|GO:0042546
	Vifa4g04402	286	PANTHER	XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED	22	283	IPR044791	GO:0004553
	Vifa4g04402	286	ProSitePatterns	Glycosyl hydrolases family 16 active sites.	99	109	IPR008263	GO:0004553\|GO:0005975
	Vifa4g04402	286	SUPERFAMILY	Concanavalin A-like lectins/glucanases	24	285	IPR013320	-
	Vifa4g04402	286	FunFam	Xyloglucan endotransglucosylase/hydrolase	12	285	-	-
	Vifa4g04402	286	Pfam	Xyloglucan endo-transglycosylase (XET) C-terminus	239	283	IPR010713	GO:0005618\|GO:0016762\|GO:0044042\|GO:0048046
	Vifa4g04402	286	Gene3D	-	13	285	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vifa4g04402	Vifa-Chr4	1389140341	1389141364	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vifa4g04402	11	286	Glycoside Hydrolase	AT5G57560	67.754	1.04e-145	409

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vifa4g04402	K14504		-	gmx:100807063	469.544

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Vifa4g04402	4	1389140341	1389141364	Vifa1g08844	1	1399878690	1399879756	PCT