Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g08844 ATGAAAATGAAGGGTTCTATTGGGTTTCTTGTCTCTGTTGTAGCCACTTTTTTTGTGGTTGCATCCGCTGGTAATTTTACTCAAGACTTTGAAATAACATGGGGTGATGGTCGTGCAAAAATTCTTGAAAATGGGCAGAGTCTTAGCCTCTCTTTAGACAAAGTTTCTGGTTCTGGATTTCGTTCCAAAAATGAATACTTGTTTGCTAAAATTGATATGCAAATTAAACTTGTGCCTGGTAACTCCGCTGGCACTGTCGCTACCTATTATCTATCTTCTCAAGGGCCTAGTCATGATGAAATAGACTTTAAATTTCTTGGTAACTTGAGTGGTGATCCTTATACACTTCATACAAATGTATTCACACAAGGAAAGGGAAATAGAGAACAACAATTCCATTTGTGGTTTGACCCCACCAACGACTTCCACACATATTCTATTCTTTGGAATCCTCAAAGCATCATATTCTCCGTGGATGGAACACCAATAAGAGAATTCAAGAATTTAGAATCAAAGGGAGTTGATTTTCCAAAGAAGCAGCCTATGAGGATATATGGTAGTCTATGGGATGCTGAGAATTGGGCCACAAGAGGTGGTCTTGTCAAAATTGATTGGGCCCAAGCCCCATTCATTGCCACATATAGAAACTTCAATGGACAAGTTTGTTTTTGGACTTCTTCAGGATCTTCTTGTTCTTCCAACGAATCTCCATCATGGTTAAGAAAATCATTGGACTCAAAGGGATTAGCTAAACTTCAATGGGCGGAAAGGAATCATATGATTTATAACTATTGCACCGACACTAAACGTTTTCCACAAGGACCTCCTTCCGAATGTCTTGCTTAA 846 0.3889 MKMKGSIGFLVSVVATFFVVASAGNFTQDFEITWGDGRAKILENGQSLSLSLDKVSGSGFRSKNEYLFAKIDMQIKLVPGNSAGTVATYYLSSQGPSHDEIDFKFLGNLSGDPYTLHTNVFTQGKGNREQQFHLWFDPTNDFHTYSILWNPQSIIFSVDGTPIREFKNLESKGVDFPKKQPMRIYGSLWDAENWATRGGLVKIDWAQAPFIATYRNFNGQVCFWTSSGSSCSSNESPSWLRKSLDSKGLAKLQWAERNHMIYNYCTDTKRFPQGPPSECLA 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g08844 281 ProSiteProfiles Glycosyl hydrolases family 16 (GH16) domain profile. 20 214 IPR000757 GO:0004553|GO:0005975
Vifa1g08844 281 Pfam Xyloglucan endo-transglycosylase (XET) C-terminus 236 279 IPR010713 GO:0005618|GO:0016762|GO:0044042|GO:0048046
Vifa1g08844 281 PIRSF EndGlu_transf 1 281 IPR016455 GO:0010411|GO:0016762|GO:0042546
Vifa1g08844 281 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 23 279 IPR044791 GO:0004553
Vifa1g08844 281 FunFam Xyloglucan endotransglucosylase/hydrolase 13 281 - -
Vifa1g08844 281 Gene3D - 11 281 - -
Vifa1g08844 281 PRINTS Glycosyl hydrolase family 16 signature 134 151 IPR008264 GO:0004553|GO:0005975
Vifa1g08844 281 PRINTS Glycosyl hydrolase family 16 signature 58 76 IPR008264 GO:0004553|GO:0005975
Vifa1g08844 281 PRINTS Glycosyl hydrolase family 16 signature 116 129 IPR008264 GO:0004553|GO:0005975
Vifa1g08844 281 CDD GH16_XET 21 279 IPR016455 GO:0010411|GO:0016762|GO:0042546
Vifa1g08844 281 Pfam Glycosyl hydrolases family 16 27 206 IPR000757 GO:0004553|GO:0005975
Vifa1g08844 281 SUPERFAMILY Concanavalin A-like lectins/glucanases 26 280 IPR013320 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g08844 Vifa-Chr1 1399878690 1399879756 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g08844 1 281 Glycoside Hydrolase AT4G25810 66.667 3.15e-144 404
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g08844 K14504 - gmx:100807063 450.669
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g04402 4 1389140341 1389141364 Vifa1g08844 1 1399878690 1399879756 PCT