Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g04342 ATGTTGCCAATTGTTGAAGGCGATGAAGAAGATGATTACAATGTTGAAACTATAACAAACAACCTTTCTAGGAATTCATCGTCATCATCCAAGTCCATAGAAAATGATCCAAATTGGAAAGTTGATAAAGAAGATAACAATTCGAAAAAGGATAAGAAATCATCTATATGGAGTTGGAAGCCATTGAGAGCACTTTCGTTTAGCAGGAGTAAGAAATTGAATTGTTGTTTTTCTGTTCAAGTTCATTTGATTGAAGGATTACCGTCGAGTTTCAATGATTATACTCTTTGTGTTCATTGGAAACGGCGCGATGAACATTCGGTTACTCCTCCGGCCAAAGTGATCGAAGGTGTTTGTAGGTTTGAAGATATTTTGAACTGTAGTTGTTCGATTGTTGGAAGTAAAAGTGGATTTAATAATTCCGCTAAGTATGAAGCTAAGCATTTTTTGCTCTATGTTTCTGTGATTGGTGTTCCGGAAATTGATTTGGGGAGTCAGCGTTTGGATATCACGAGGCTACTTCCGCTTTCGTTGGAGGATCTTGAAGAGGAGAAAAGCTCGGGGAAATGGAGTACGAGTTTTAATTTATCGGGAAAGGCGAAAGGTGCTGTGATGAATGTGAGTTTTGGGTATATGGTGGTTCGTGATAACAACAGTTTGGCTCCTAATGTGTTGACTTCGAGGCAAAATTGTTTGGCTTTGAGCGAAACGGATGTGAATTTTTGTCATTATCCGGCTCGGGTTATAGATGAGGTGAAGGATCTTCATGAGGTATTGACATCGCCAAAATCAGCAATGGCCAGTTCAACAAATACATTACCTAAGAAATTTCACGATGAAGATGCATGCAGTCCCCTTGACAAGAAAGACGAACTTGTTGTACTAAAAGAGAATCTCGAGCCAGTCAAATTCGATGTGTTTCAAGAAAACTTGAAGACAGTTGAGTCTTTAAGAGAGAAATGTGAATATGATGGATTTTCTGTTGTTGATCAGGGTGTTGAGTTTTCACCAAATGAACATGTTCAAGTGGAGGAATCCATTGTTGATAGTTCTAAGGAATTTTCTGTGGTACATGAGTTTTCTAACAAAAAGGTTGAGTTATGCACGAAAGAACTTCTCATGCAAGAAATAGAATCGGCTTTAAATAGTGTCTCGGAATGGGAGACAGCGGCAATGGAATCTCCTAAAATTATGGAAGTCACATCTGAATGTAAATTTAGCCAGTCACTCAGCTTGGATGATGCCACCGAACAAGTTGCCAGTGAATTTTTTAGTACGCTGGGCGTAGACAATAGCCCAACAGGTTTTAGTTCTGAAAGTGAGCCTGAATCTCCGAGAGAGCGCCTTTTAAGACAGTTTGAGAAGGAAGTTGGATCTGAGGGCTTCTCTTTATTTGATGTGGAAATAGGTTATGATGATGATGACGAAGGAGATTATGGCAGTTATGATGCTTCTTATGAATCTGATCAGGGGGAATTCTCTGCAGGTATTAAGTCACCATCCTTGTTACATGATCTGCAGGAAGGGGTTGAATTCGAGGATGTGAGGAGAAAACTAAAGGGACAAATACTTGAAGACTTGGAAACAGAAGCCTTAATGCGTGAATGGGGTTTCAATGAGGAAGCTTTTCAGCATTCTTCACCAAAAGACTTTGCTGGTTTTGAAAGTCCAGTGCACCATCTACCTGCAGAACCTCCTAGATTACCTCCTCTGGCAGAAGGGTTTGGTCCTTTTCTCCAAACAAAAGATGGGGGATTTGTAAGGTCTATGAATCCCTCGCTTTTTATGAATTCTAAAAATGGCGGGAGCTTAATCATGCAAGTTTCCAACCCTGTTGTTATGCCTGCAGAAATGGGTTCAGGGATAATGGAGACTTTGCAGTATTTGGCATCTGTTGGAATTGAAAAGCTTTCAATGCAGGCAAACAAGTTTTTGCCTCTGGAAGATATCACAGGGAAGACAATGCAACAAATATCATGGGAAGCCATGTCAAGCTTAGAGGAAAAAGACAGGCAATGGCATCTGCAACATGATTTGGTGACACGGAATGGTTCAACCTGCGCGCAAAGGGACATGAAAGGATCACCATCTAGACTAAAGTCTGATGAGTTTATTTCAAGTTCAATTGGCAACCAGGGAGGTTCAGGCTTTTTTTCATTGGAAGATCTTGCTCCTTTGGCTATGGATAAAATTGAAGCACTTTCATTGGAGGGTTTAAAAATACAATATGGGATGTCGGAAGAGGATGCCCCATCAAACATCATTGCACAACAATCCTTTAAAGATCCTCCTGGTCTCCAACACAAGGGGGTTAACATTGGTGGTTCTCTTGGCCTGGATGGAGCTGCTGCTTTGCAATTGTTAGATATTAAATGCAGTAATGATGAAGTCGATGGGATAATGGGATTATCATTAACTCTTGATGAATGGATGAAACTGGATTCGGGTGAGATTGATGATATAGATTATATCAGTGAGCGTACTCGCAAACTTCTTGCTTCCCATCATGCCAACTCTTTTGATGTAGTTCGTGAGAGTTCAAAGGGAAGGAAGAAACAGGGCAAAGATCACAGCAGGAAATGTGGTTTGCTGGGAAACAATTTCACAGTAGCACTAATGGTGCAACTTCGTGATCCTCTGAGAAATTATGAACCAGTTGGAACACCAATGCTTGCTCTTATACAAGTCGAGAGAGTGCTGGTCCCACCAAAACAAAAGATTTATTTGACTGTGTCCGAGGTAGGGAACAATAGTGATGAGGATGATGAGTGTGAAATAAAAGCAAAGGTATGCATGAAAGAAAACAAAGAGGAGAGAAGTACTAAAGAAAGTGGCATTGCTCAGTTCAGGATTACAGAAGTCCATGTTGCAGGTCTTAAGCTTGAGTCCCATAAAAAGAAGCTTTGGGGTACATCAAAACAGCAACAGTCTGGTTCCCGTTGGTTGATTGCTAATGGAATGAGTAAAAGCAAAAGCAATAAGAATCCATTGATGAAGTGTAAGGCTGTTTCTAAATTTGGTGCTCAGGTTACCACCACAAAGGTGCAACCTGGAGACACATTGTGGAGTATATCATCTCGTATATTTGGTACTGGCGCAAAATGGAAGGAATTGGGAGTACTCAATCCACATATAAGAAATCCCAATATCATTATACCAAATGAATCTATAAGAATAGGTTAA 3183 0.4031 MLPIVEGDEEDDYNVETITNNLSRNSSSSSKSIENDPNWKVDKEDNNSKKDKKSSIWSWKPLRALSFSRSKKLNCCFSVQVHLIEGLPSSFNDYTLCVHWKRRDEHSVTPPAKVIEGVCRFEDILNCSCSIVGSKSGFNNSAKYEAKHFLLYVSVIGVPEIDLGSQRLDITRLLPLSLEDLEEEKSSGKWSTSFNLSGKAKGAVMNVSFGYMVVRDNNSLAPNVLTSRQNCLALSETDVNFCHYPARVIDEVKDLHEVLTSPKSAMASSTNTLPKKFHDEDACSPLDKKDELVVLKENLEPVKFDVFQENLKTVESLREKCEYDGFSVVDQGVEFSPNEHVQVEESIVDSSKEFSVVHEFSNKKVELCTKELLMQEIESALNSVSEWETAAMESPKIMEVTSECKFSQSLSLDDATEQVASEFFSTLGVDNSPTGFSSESEPESPRERLLRQFEKEVGSEGFSLFDVEIGYDDDDEGDYGSYDASYESDQGEFSAGIKSPSLLHDLQEGVEFEDVRRKLKGQILEDLETEALMREWGFNEEAFQHSSPKDFAGFESPVHHLPAEPPRLPPLAEGFGPFLQTKDGGFVRSMNPSLFMNSKNGGSLIMQVSNPVVMPAEMGSGIMETLQYLASVGIEKLSMQANKFLPLEDITGKTMQQISWEAMSSLEEKDRQWHLQHDLVTRNGSTCAQRDMKGSPSRLKSDEFISSSIGNQGGSGFFSLEDLAPLAMDKIEALSLEGLKIQYGMSEEDAPSNIIAQQSFKDPPGLQHKGVNIGGSLGLDGAAALQLLDIKCSNDEVDGIMGLSLTLDEWMKLDSGEIDDIDYISERTRKLLASHHANSFDVVRESSKGRKKQGKDHSRKCGLLGNNFTVALMVQLRDPLRNYEPVGTPMLALIQVERVLVPPKQKIYLTVSEVGNNSDEDDECEIKAKVCMKENKEERSTKESGIAQFRITEVHVAGLKLESHKKKLWGTSKQQQSGSRWLIANGMSKSKSNKNPLMKCKAVSKFGAQVTTTKVQPGDTLWSISSRIFGTGAKWKELGVLNPHIRNPNIIIPNESIRIG 1060
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g04342 1060 ProSiteProfiles LysM domain profile. 1011 1059 IPR018392 -
Vifa4g04342 1060 Pfam LysM domain 1014 1059 IPR018392 -
Vifa4g04342 1060 MobiDBLite consensus disorder prediction 19 35 - -
Vifa4g04342 1060 Pfam N-terminal C2 in EEIG1 and EHBP1 proteins 70 215 IPR019448 -
Vifa4g04342 1060 PANTHER PROTEIN PLASTID MOVEMENT IMPAIRED 1-RELATED 1 24 1054 IPR039614 -
Vifa4g04342 1060 CDD LysM 1014 1059 IPR018392 -
Vifa4g04342 1060 SMART LysM_2 1012 1060 IPR018392 -
Vifa4g04342 1060 MobiDBLite consensus disorder prediction 19 52 - -
Vifa4g04342 1060 ProSiteProfiles C2 NT-type domain profile. 65 213 IPR019448 -
Vifa4g04342 1060 MobiDBLite consensus disorder prediction 36 52 - -
Vifa4g04342 1060 Gene3D LysM domain 1005 1060 IPR036779 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g04342 Vifa-Chr4 1373417736 1373421026 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g04342 - - cam:101503777 1402.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g04342 4 1373417736 1373421026 Vifa4g04342 4 1373417736 1373421026 ECH
Vifa4g04342 4 1373417736 1373421026 Vifa1g08719 1 1376552440 1376556543 PCT