Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g08719 ATGTTGTCGAGGATGGATAGTAAGAAGAATAGTTTGGTTTCTGGAAACCAGAAGAAATTGTTAAAGGATGTTGACATTATGAATAAAGCTATGCACTTGGACAAAAATGTTTCGAGGAGTTCAGTATCTGGTTCGAATTCGAATTCTCGAGCTAAAACCACGGGAAAATCTGTATTTCCGGATTCAAAACCAAAGGCTAAAGGAAGTAATAATAATGATGATAATGATGGTTTGCAGAAGGATAAAAGGTCTATATGGAATTGGAGGCCATTGAAAGCACTTTCGCATATCCGAAATAAACGGTTCAATTGTAGTTTTTATCTTCATGTACATTTGATTGAAGGGTTGCCTTCTACTTTTGATGGTTCGAGTTTTTCTGTGTTTTGGAAGAGGAGGGACGGGGTTTTGGTGACTCGATCAGCGAAAGTGATTCAGTCTGTAGCTGAATTTGATGAGAAGTTGACTTATACTTGCTCGGTTTACGGCAGTAGGAGTGGACCTCACCATTCTGCAAAGTATGAAGCGAAGCACTTTTTGCTATATGCTTCTCTTCTCAGTGCACCGGAGCTTGATTTGGGGAAGCACCGAGTGGATCTCACGAGGTTGCTTCCTCTTACTCTGGAGGAGCTTGAGGAGGAGAAGAGCTCGGGTAAGTGGACTACTAGTTTCAGGTTATCAGGAAAGGCTAAGGGTGCTGTGATGAATGTCAGTTTTGGGTATATGGTTGTTGGTGATAACGCCAGCACGACCAAAGATGGTCATAATGCTCCTAATGTATTGACTTCGAGGCAGAGTGGTAGTCTTGCATTGACGAAACCAGATGTTAAACAGAGACAGTATGATGGAAGCAGCAGTGTGAGGCGTGCTGGAAGTTTTCACGGTGCTTTACCCGTAGACGCTTCTCAAGGTAAAAACCTTAGCAGACTGTACTCGTCTCAAGCTGTAGAGTCGGTAAAGGATCTTCATGAGGTGTTGCCATCTTCTAAGTCTGCACTAGCCAGCTCAATAGGCGTCTTATATAAGAAATTTGACGAGGAAAAAGAAAGCAGATCGGTGGACAACAAACCTGATCCTGATTTGTCAAAAGAAAATATTGAGCTAATTAAACCAGATGCATGTGCTTCATCTGATATTGAAAAAGAAATGCAGGAAGTGCATGTAGATAACGATGGAAATACATCTCCAGTGCTTGACACACCTGAACTCGATGTATTTCATGAAAACCTAGAGACAGATAAACAAGATGGCTATCTTTTACTTGATTCTGAAAAAGAAAACCCCGAAGACTGTCAAGATAAGGATTTTTTTGTCGTTGATAAGGGTATAGAAATCTCACCAATTGAACCCGTTAAAGTAGAGGAATCATTCACAGAGGCTTCTGAAGATGCTTCTACAGTTGATAGTTCTCTTATCCTAGATACTGCAGGTTTACAAGTTTCTTCCGAAGATAGTTTTATACATGATTCTCTTCATGAGGCAAATGACGGTTGTAAGGATCACACGGTGGCCGATGAATCTGCTTACGAAGATGATGATTTATTCACAAATGAACTGCTGCAAGAATTAGAAGCTGCTATAAATAGTGTCTCAGATTTGGAGACGGTGGCTCTAGAATCTCCAAAAAAATTGGAATTCAGAACTGAATATAAGATGAGAAAGACAGATAGCTTAGACGATGTTACAGAATCGGTTGCAAATGAATTTTTAAGCATGCTAGACATAGACCATAGTTCAGCGGGCTCAAATTCTGGAAACGAGCCCGAGTCTCCGAGAGAGCTTCTGTTAAGACAATTTGAGAAGGAATCACTGGGTGGTGGCTTCTCTTTATTTGATTTTGATATGGACTGTGACAACGAAGCTGGTGATGACTATGATGCCTCTACTGGATCTGAGCAGTTGAACTTCTCTGAGGCTATTCATTCATCATCCTTGTTCCAAAACCTGAACAAGGAGCATCTCATTGAGACTCGGGACGTTAAGGGCAAACAAAAGGCTCAAATGCTAGAAGACTTGGAAACTGAAGCCTTAATGCGTGAATGGGGTTTGAATGAGAAGGCTTTTCATCATTCTCCACCTAAAGACTGTATTGGTTTTGGAAGTCCAATTCAATTACCACCTGAAGAGCTTCCCACATTGCCTCCTCTTGCCGAGGGGTTAGGCCCTTTTCTTCAGACAAAAGACGGGGGCTATCTACGGTCTATGAATCCGTCAATTTTCAAGAACACTAAAGCTGGTGGGAGTTTAGTCATGCAGGTTTCGAACCCTGTTGTTGTACCTGCAGAAATGGGTTCTGGAATAACGGAAGTGTTACAGTGTTTGGCTTCGGTTGGTATTGAAAAACTCTCAATGCAGGCAAAGGAGTTAATGCCACTGGAAGATATCACAGGGAAGACAATGCAACAAGTTGCATGGGAAGCTATGCCGGCCTTAGAGGGAACCGAGAGGCTATGTCATTTGCGACAAGATTCAGTAACAGGTCAAGATACTACATGTGTGCAAAGGGACTTGAACGGAACACCACCATCTGGACCGAAATCTGGCAATTTTAATTCAAGATCAGTGGCCAACCAAACAGGCTCAGAGTTTGTTTCAATCGATGATCTTGCCCCACTGGCTATGAACAAAATTGAAGCGCTTTCAATGGAGGGATTGAGAATACAATCCGGGATGTCAGAGGAGGAGGCCCCATCTAACATCGTTGCACAATCCATTGGTGAAATGTCAGCTCTCCAAGGCAAGGGCATTAATTTTAGCGGATCCCTCGGCATGGAAGGAGCTGCTGGTTTACAGTTGATGGATGTAAAAGACAGCAGTCACAGTGACAGTGTTGACGGGATAATGAGCCTTTCATTAACTCTTGATGAGTGGATGAAGCTTGATTCTGGTGACATTGATGATATAGATAATATCAGTGAGCATACTTCCAAACTTCTTGCAGCCCATCATGCTAACTCTTTCGACTTTATCCGCGGGAGTTCAAAAAACGGAGATAGGAGACGAGGCAAAGGCTCGGGTCGAAAATGCGGTTTGCTAGGAAACAATTTCACAGTAGCGTTAATGGTGCAGCTTCGTGACCCTCTGAGAAACTATGAGCCAGTTGGAACACCAATGCTTGCTCTTATACAAGTCGAAAGAGAGTTTGTTTTACCAAAGCAAAAAATATTTTGTAGTGTATCCGAGTTAAGGAACTACAACAATGACGAGGATGATGAGGGCAATATCGTAGCAAAGGTGGAGGAGATCAAGGATACAAAAATAGAAGAGAAAATTTCTGAAGCAGAACTCATTCCTCAGTTCAAGATTACTGAAGTTCACGTGGCAGGTCTTAAAACCGAGCCACATAAAAAGAAGCTTTGGGGCACGTCGACGCAGCAACAATCCGGTTCACGCTGGTTGGTTGCGAATGGAATGGGGAAGAACAGTAAGTTTCCACCAATGAAGTCAAAGGCTGCAGGTAAATCTGTTGCTCCGGTTACCACGAAGGTACAGCCTGGTGAAACGTTGTGGAGCATTTCTTCACGACTTTTAGGTTCTGGAAAAAAATGGAAGGAATCGGCAGCTCTACCGCATATAAGAAACCCGAATGTCATTATACCAAATGACACTGTTAGACTTAGTTGA 3621 0.4253 MLSRMDSKKNSLVSGNQKKLLKDVDIMNKAMHLDKNVSRSSVSGSNSNSRAKTTGKSVFPDSKPKAKGSNNNDDNDGLQKDKRSIWNWRPLKALSHIRNKRFNCSFYLHVHLIEGLPSTFDGSSFSVFWKRRDGVLVTRSAKVIQSVAEFDEKLTYTCSVYGSRSGPHHSAKYEAKHFLLYASLLSAPELDLGKHRVDLTRLLPLTLEELEEEKSSGKWTTSFRLSGKAKGAVMNVSFGYMVVGDNASTTKDGHNAPNVLTSRQSGSLALTKPDVKQRQYDGSSSVRRAGSFHGALPVDASQGKNLSRLYSSQAVESVKDLHEVLPSSKSALASSIGVLYKKFDEEKESRSVDNKPDPDLSKENIELIKPDACASSDIEKEMQEVHVDNDGNTSPVLDTPELDVFHENLETDKQDGYLLLDSEKENPEDCQDKDFFVVDKGIEISPIEPVKVEESFTEASEDASTVDSSLILDTAGLQVSSEDSFIHDSLHEANDGCKDHTVADESAYEDDDLFTNELLQELEAAINSVSDLETVALESPKKLEFRTEYKMRKTDSLDDVTESVANEFLSMLDIDHSSAGSNSGNEPESPRELLLRQFEKESLGGGFSLFDFDMDCDNEAGDDYDASTGSEQLNFSEAIHSSSLFQNLNKEHLIETRDVKGKQKAQMLEDLETEALMREWGLNEKAFHHSPPKDCIGFGSPIQLPPEELPTLPPLAEGLGPFLQTKDGGYLRSMNPSIFKNTKAGGSLVMQVSNPVVVPAEMGSGITEVLQCLASVGIEKLSMQAKELMPLEDITGKTMQQVAWEAMPALEGTERLCHLRQDSVTGQDTTCVQRDLNGTPPSGPKSGNFNSRSVANQTGSEFVSIDDLAPLAMNKIEALSMEGLRIQSGMSEEEAPSNIVAQSIGEMSALQGKGINFSGSLGMEGAAGLQLMDVKDSSHSDSVDGIMSLSLTLDEWMKLDSGDIDDIDNISEHTSKLLAAHHANSFDFIRGSSKNGDRRRGKGSGRKCGLLGNNFTVALMVQLRDPLRNYEPVGTPMLALIQVEREFVLPKQKIFCSVSELRNYNNDEDDEGNIVAKVEEIKDTKIEEKISEAELIPQFKITEVHVAGLKTEPHKKKLWGTSTQQQSGSRWLVANGMGKNSKFPPMKSKAAGKSVAPVTTKVQPGETLWSISSRLLGSGKKWKESAALPHIRNPNVIIPNDTVRLS 1206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g08719 1206 PANTHER PROTEIN PLASTID MOVEMENT IMPAIRED 1-RELATED 1 1 1200 IPR039614 -
Vifa1g08719 1206 MobiDBLite consensus disorder prediction 249 288 - -
Vifa1g08719 1206 MobiDBLite consensus disorder prediction 35 56 - -
Vifa1g08719 1206 CDD LysM 1161 1205 IPR018392 -
Vifa1g08719 1206 ProSiteProfiles C2 NT-type domain profile. 94 242 IPR019448 -
Vifa1g08719 1206 Gene3D LysM domain 1159 1204 IPR036779 -
Vifa1g08719 1206 Pfam N-terminal C2 in EEIG1 and EHBP1 proteins 99 241 IPR019448 -
Vifa1g08719 1206 MobiDBLite consensus disorder prediction 249 286 - -
Vifa1g08719 1206 ProSiteProfiles LysM domain profile. 1158 1205 IPR018392 -
Vifa1g08719 1206 MobiDBLite consensus disorder prediction 35 79 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g08719 Vifa-Chr1 1376552440 1376556543 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g08719 - - mtr:25486459 1844.71
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g08719 1 1376552440 1376556543 Vifa1g08719 1 1376552440 1376556543 ECH
Vifa4g04342 4 1373417736 1373421026 Vifa1g08719 1 1376552440 1376556543 PCT