Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g04324 ATGGATCCAACCGATCAAAATAATCAAGAACACCCATGTTCTCCTGCTCTTCGCAAGAGACTACTTGAACAGGAAGATGATACTGATGCATATTACCTCGGTCTTTTGCCTCCAGAAGCTTATGATACTTCCAAACGCATCAAAACACACGATTTTTTAGCCGCTTTCGACGAACCAAAACGCGAAACCATCGTTATCTCTGACAGTGATGAGGAAGTTCAACATGACAGTGAAAGTGAAACTGAAACTGAAAGTGATGATGATAGACGCATTGTCGCGCGGACTTTGACATTGTTTCCTACAAATCAGCAAGAGGAGTATAACAAGAATATCGCAAGAAGATATGCAGCACGCGTTCATAATGCAAGAAGATATGCAGCACGCATTCATGATGCTGTGAGCAATGCCGCGGATAAACTCGATGATGATGATGTGGAAGGTGAAGTTGATGAAGTTGATGATGATTCTCCAACTCCATTCTCTGAAGCAATCAAGGCTATTCAAGATCGCGCCGAGAGAAACCATAAAAGAGGGATTGTTGAAGAACCTCCTGTATGGATTCCAAAAAGAAACGGAAAAGATTCGGTTAGGAGAAGGTTGTATGTTCCATCATTGCAAGAACTGACTGTTAACATTCTTGCTAAGCATTCTGACGCAATCGTTTCGCTCGATTGTGTCTGCGACGAGCTCAGACACAGGCTTAGTAATCTGCTGTGTGATTCAAGAAAAATGAACAGTCACTTTCTTGAACTACTTCTTGCTGATGTTCCTACTCAAATTCGGCTTAAAGACTGTTCGTGGTTGACAGAAGAAGAGTTTACTAAATATTTCGGAACTTTGGTCACTTCTGAAATCGGGGTGCTGCAACTTGACAAGTGTGGAAGATTTATGAGTGAATATACATTACCTGCTACATTGGCAAAGTCACCAAACTCCTTGTCTAACTTAACCATTCTATCGCTTACTGGTGCATGTCGTCTTACGAATGAAGGATTGCGGTTACTAGTTTCGTCTGCAACCGAACTTAGATCCATAAACCTAAGCCAGTGTTCACTTCTCACTTATTCTAGTCTTGAAATTTTGGCTGATTCATTAGGATCAATTTTGAAAGAGTTGCGAATTGATGATTGCATACTCATTGATGTTGCGCGGATTTTGCCTGCCTTGAAGCAATTCAAACAATTAGAAGTTTTGTCACTAGCCGGTGTTCCATCTGTTTCGTATAAGTTTATTAAGAGTTACTTCATCGCGTGCGGTCACAACATTAAGGATCTTGTTTTAAAGGACTGTGTAAATTTGACAGATGCGTCCATTAGAGTCATTGCTAAAAATTGTCCTGGTTTGCGCGTGCTTGATATTATGAACTTGGGAAAATTGACGGATTTATCCATTGAATATCTTGCGAATAATTGTCGAGGATTGCGTACATTGAAGCTCTGCCGCAATCCATTCAGCGATGAAGCAATTTCGGTATTTTTGGAGTTAGCTGGCAAAACCTTGGAAGAACTTTCACTTAATAGCATTAACAAGGTTGGCCTATTGACAGCCTCATCACTAGTAAAGAATGGCCAAAATTTGCATACCTTGGATCTATCATGGTGTCGAAATCTGTCTGACAATGAGCTTGGTTTAATTGTCGATAGCTGCTTGTCGCTGAGGTCACTTAAAGTTTTCGGATGCTCGCAGTTAACAGATATGTTTTTCAGACACTCGAACACAGGGACTCGGATCATTGGGTTGAAGTTGAGTCCTTTATTTCAGCAATTCGAGTCTTGCTGTAAACTTTGA 1788 0.4077 MDPTDQNNQEHPCSPALRKRLLEQEDDTDAYYLGLLPPEAYDTSKRIKTHDFLAAFDEPKRETIVISDSDEEVQHDSESETETESDDDRRIVARTLTLFPTNQQEEYNKNIARRYAARVHNARRYAARIHDAVSNAADKLDDDDVEGEVDEVDDDSPTPFSEAIKAIQDRAERNHKRGIVEEPPVWIPKRNGKDSVRRRLYVPSLQELTVNILAKHSDAIVSLDCVCDELRHRLSNLLCDSRKMNSHFLELLLADVPTQIRLKDCSWLTEEEFTKYFGTLVTSEIGVLQLDKCGRFMSEYTLPATLAKSPNSLSNLTILSLTGACRLTNEGLRLLVSSATELRSINLSQCSLLTYSSLEILADSLGSILKELRIDDCILIDVARILPALKQFKQLEVLSLAGVPSVSYKFIKSYFIACGHNIKDLVLKDCVNLTDASIRVIAKNCPGLRVLDIMNLGKLTDLSIEYLANNCRGLRTLKLCRNPFSDEAISVFLELAGKTLEELSLNSINKVGLLTASSLVKNGQNLHTLDLSWCRNLSDNELGLIVDSCLSLRSLKVFGCSQLTDMFFRHSNTGTRIIGLKLSPLFQQFESCCKL 595
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g04324 595 MobiDBLite consensus disorder prediction 63 89 - -
Vifa4g04324 595 SMART LRR_CC_2 313 338 IPR006553 -
Vifa4g04324 595 SMART LRR_CC_2 445 470 IPR006553 -
Vifa4g04324 595 SMART LRR_CC_2 339 364 IPR006553 -
Vifa4g04324 595 SMART LRR_CC_2 471 495 IPR006553 -
Vifa4g04324 595 SMART LRR_CC_2 549 574 IPR006553 -
Vifa4g04324 595 SMART LRR_CC_2 523 548 IPR006553 -
Vifa4g04324 595 SMART LRR_CC_2 419 444 IPR006553 -
Vifa4g04324 595 SUPERFAMILY RNI-like 284 565 - -
Vifa4g04324 595 MobiDBLite consensus disorder prediction 1 22 - -
Vifa4g04324 595 Gene3D Ribonuclease Inhibitor 277 410 IPR032675 -
Vifa4g04324 595 Gene3D Ribonuclease Inhibitor 411 516 IPR032675 -
Vifa4g04324 595 Gene3D Ribonuclease Inhibitor 517 582 IPR032675 -
Vifa4g04324 595 PANTHER UNCHARACTERIZED 231 570 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g04324 Vifa-Chr4 1366415497 1366417787 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g04324 K15082 - gmx:100798274 530.406
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g04324 4 1366415497 1366417787 Vifa4g04324 4 1366415497 1366417787 ECH
Vifa4g04324 4 1366415497 1366417787 Vifa1g08672 1 1368423210 1368428061 PCT