Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g08672 ATGGCTCCACCAGCCAAAACAACCCCCAAACCCTCCAAACCAAACCACATTCACCCTCTCACTCCCACTCAAACCACCGAATCTCCTCCCATCTTCTCCTCCGCCCCCCCGCGGAGACGCAGCCTCCGCCTCGCCGCCATTTCCATCTCCGAACCTCCCCAATCCCCACCCGAATCAACCCCCAAACCCTCCGCTAGGGTTTCCAAATCAAAAATCCAAAAATCAAACCTAACCGCTTCCGAATCCAAAGCTAATCAAACAAGCAAGAGTTCCGTTAACTTGCGAACAGGAAAAAAAGTTCTCAAACGCGGAATCACTATCGCAAACGAAAACCAAGACGAAGACGGTTCTGAAAACAACGCTTCGAAAAAGAATAAACTAAACGATGAAGGTGAATCGAGTGAAAGACGAATACTAACAAGGGAAGAGAAAGGGAAGGAAACTGTTGTTATTGATGAAAATAATGAAAACGATGAAAGCAGTGAAGAAAGCAGTGAAGAATCCGAAATAGAGAACACTATTACGGAAGAGAAAAATGATGCATCGAATGTTATACAACAATCTAGAAACTCTGCCAATAACAGCAGAGGGGAACGCGGTTTGAGGAGGAACTTGGAACGGTTCCGTAACATAGCAAGAGAGAACGCGTCTCGTTTTGCGCTTTTTGCTAATGACGAAAACCATGTTGATGATTTATCTCCGGAGAATGAGCAGGAGAAGAATGCGATTGAGATTGAAGATTGGCCTGGTCCTTTTTCGACCGCTATGAAAATCATTAGGGATAGAGAGAAGAAAGGGATTCAGTTTCAAGCGGGGTCTGCTTCTGTACAGAAGGATTTGATTGATTCGATAAAGTGGAATCCGAAGACGAATGTGGAGAAGTTTGATGGAAAGGTTTCTGTTCCATCGTTGCAAGAGCTTTGCATTCGGATTCTTGCTAAGAATGTTGATGCAGTTGTTTCGCTTGAGAGTGTGCCTGATGCTTTGAGGCATAGGCTTAGTCAGTTGCTGTGTGATTCACGGAGGATGAATGACCATTTTTTTGAACTTCTTGTTGTTGGAACTCCAACAGAGATTCGGCTTAGAAATTGCTCGTGGTTATCTGAGGAACATTTTACAAAGTGCTTTCAAGCAAGTGACACTTCTAATTTGCTGGTACTGCAACTTGATCTGTGTGGGCGGTGTTTGCCGGATTATGTCGTAGTTGCTAGTTTAGCACGGTCCCCAAAGCAGCTGCCTAAATTAACTAGTCTATCTCTCAGAGGTGCATGCCGACTCTCAGATGGGGGATTGCAAGCACTTGTTTTTTCTACTCCAACACTTGGTTCAATAAATCTTAGCATGTGCTCCCTTCTCACTTCTGCTAGTCTTTATATTTTGGCTGAAACATTAAAATCTCTTTTGAAAGAGTTGTACCTTGATCACTGCCTTGGCATTGATGCTGCACTAATTGTGCCAGCACTGGTGGAGTTTGAACATTTAGAAGTGTTGTCGGTGGCTGGCATTCCAACTGTTTGCGATACATTTGTCAAGGATTACATTGTTGCACGTGGTCACAACATGAAAGAGCTAAATCTGAAGGACTGCATAAACTTGACCGATGAATCAATAAAAGTCATTGCTGAACACTGTCCTGGAATGTGTAGGCTTGATTTATCAAATGTGTGCAAATTAACAGATCTGTCCATGGGATATCTTACAAATGGTTGTCGTGCACTTCATACACTGAAGCTTTGCCGTAACTCATTCAGTGATGAAGCAGTTGCTGCATTTGTGGAGACTAATGGAGAGTCTTTGAAAGAACTATCGCTTAATAACGTTAAAAAGGTTGGCTACCACACAACCTTATCACTTGCAAGCCATGCAAAAAAACTGCATAGTTTAGATGTATCTTGGTGCCGAAATTTGACTGACAACGCATTAGGTTTGATAGTGGACAGTTGCTCGTCACTGAGATTACTTAAACTTTTTGGATGTACTCAGGTAACAGATGTTTTTCTAAAGGGCCACTCAAACTCTCTGGTCCAGATAATTGGTATAAAAATGACTTCTGTTTTACAACATGTCAAAGTGCCGGATCCTCATCAAGGCGCATTGAATTATTCATCGGTCTCCGTAGATTTGGCTGCGTAG 2133 0.4294 MAPPAKTTPKPSKPNHIHPLTPTQTTESPPIFSSAPPRRRSLRLAAISISEPPQSPPESTPKPSARVSKSKIQKSNLTASESKANQTSKSSVNLRTGKKVLKRGITIANENQDEDGSENNASKKNKLNDEGESSERRILTREEKGKETVVIDENNENDESSEESSEESEIENTITEEKNDASNVIQQSRNSANNSRGERGLRRNLERFRNIARENASRFALFANDENHVDDLSPENEQEKNAIEIEDWPGPFSTAMKIIRDREKKGIQFQAGSASVQKDLIDSIKWNPKTNVEKFDGKVSVPSLQELCIRILAKNVDAVVSLESVPDALRHRLSQLLCDSRRMNDHFFELLVVGTPTEIRLRNCSWLSEEHFTKCFQASDTSNLLVLQLDLCGRCLPDYVVVASLARSPKQLPKLTSLSLRGACRLSDGGLQALVFSTPTLGSINLSMCSLLTSASLYILAETLKSLLKELYLDHCLGIDAALIVPALVEFEHLEVLSVAGIPTVCDTFVKDYIVARGHNMKELNLKDCINLTDESIKVIAEHCPGMCRLDLSNVCKLTDLSMGYLTNGCRALHTLKLCRNSFSDEAVAAFVETNGESLKELSLNNVKKVGYHTTLSLASHAKKLHSLDVSWCRNLTDNALGLIVDSCSSLRLLKLFGCTQVTDVFLKGHSNSLVQIIGIKMTSVLQHVKVPDPHQGALNYSSVSVDLAA 710
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g08672 710 FunFam RNI-like superfamily protein 295 512 - -
Vifa1g08672 710 MobiDBLite consensus disorder prediction 154 170 - -
Vifa1g08672 710 MobiDBLite consensus disorder prediction 116 153 - -
Vifa1g08672 710 MobiDBLite consensus disorder prediction 1 201 - -
Vifa1g08672 710 MobiDBLite consensus disorder prediction 177 198 - -
Vifa1g08672 710 FunFam DNA repair protein rhp7 isoform A 598 697 - -
Vifa1g08672 710 PANTHER UNCHARACTERIZED 355 684 - -
Vifa1g08672 710 MobiDBLite consensus disorder prediction 17 32 - -
Vifa1g08672 710 Gene3D Ribonuclease Inhibitor 299 484 IPR032675 -
Vifa1g08672 710 MobiDBLite consensus disorder prediction 61 95 - -
Vifa1g08672 710 SUPERFAMILY RNI-like 342 668 - -
Vifa1g08672 710 Gene3D Ribonuclease Inhibitor 486 696 IPR032675 -
Vifa1g08672 710 SMART LRR_CC_2 544 569 IPR006553 -
Vifa1g08672 710 SMART LRR_CC_2 438 463 IPR006553 -
Vifa1g08672 710 SMART LRR_CC_2 622 647 IPR006553 -
Vifa1g08672 710 SMART LRR_CC_2 596 621 IPR006553 -
Vifa1g08672 710 SMART LRR_CC_2 570 594 IPR006553 -
Vifa1g08672 710 SMART LRR_CC_2 518 543 IPR006553 -
Vifa1g08672 710 SMART LRR_CC_2 648 681 IPR006553 -
Vifa1g08672 710 SMART LRR_CC_2 412 437 IPR006553 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g08672 Vifa-Chr1 1368423210 1368428061 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g08672 K15082 - gmx:100808150 756.133
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g08672 1 1368423210 1368428061 Vifa1g08672 1 1368423210 1368428061 ECH
Vifa4g04324 4 1366415497 1366417787 Vifa1g08672 1 1368423210 1368428061 PCT