Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g04224 ATGGCTACTGAACGATTGACTCGGGTTCATAGTCTGCGTGAGAGGCTTGATGAGACCTTAACTGCTAATAGGAATGAAATTTTAGCTCTTCTATCAAGGATTGAAGCAAAGGGAAAGGGAATTTTGCAGCATCACCAAGTGATTGCTGAGTTTGAAGAAATTCCTGAAGAGAATAGACAGAAGCTCACTGATGGTGCATTTGGTGAAGTTCTCAGATCCACACAGGAAGCTATAGTTTTGCCACCATGGGTTGCACTTGCTGTTCGTCCAAGGCCAGGTGTTTGGGAGTATCTGAGAGTGAATGTGCATGCTCTTGTTGTTGAAAATTTGCAACCTGCTGAGTTTCTCAAATTCAAGGAAGAACTTGTTGATGGAAGTGCTAATGGTAACTTTGTGCTTGAATTGGACTTTGAACCATTTACTGCGTCTTTCCCTCGTCCTACTCTCAACAAGTCAATTGGAAATGGTGTGCAGTTTCTCAACCGTCACCTTTCTGCTAAACTCTTCCATGACAAGGAGAGTTTGCATCCACTTTTGGAATTTCTCCGACTTCACAGCTACAAAGGAAAGACATTGATGTTGAATGACAGAATTCAAAACCCTGATTCTCTTCAACATGTTCTGAGGAAAGCTGAAGAGTATCTAAGCACGGTTGATCCTGAAACTCCCTACTCGGAATTTGAACACAGGTTCCAGGAGATTGGTTTGGAGAGAGGTTGGGGAGACAGCGCAGAGCGTGTGCTCGAGTCCATTCAGCTTCTCTTGGATCTTCTTGAGGCTCCTGATCCTTGCACTCTTGAGACTTTCCTTGACAGAATCCCTATGGTGTTTAATGTTGTCATTCTTTCTCCTCATGGTTACTTTGCTCAAGATGATGTCTTGGGATACCCTGATACTGGTGGTCAGGTTGTTTACATTTTGGATCAAGTTCGAGCCCTCGAGAGCGAGATGCTCAATCGCATTAAGAAACAAGGCTTGGATATTGTTCCACGCATTCTCATTATCACCCGTCTGCTCCCCGATGCAGTCGGAACTACTTGTGGCCAACGACTTGAGAAGGTCTATGGAACCGAGCATTGTCACATTCTTCGAGTTCCCTTCAGAGATCAGAAGGGAATTGTTCGCAAGTGGATCTCACGTTTCGAAGTCTGGCCATATCTAGAAACCTACACCGAGGATGTTGCTCATGAGCTTGCCAAAGAGTTGCAAGGAAAACCAGATCTGATTGTTGGAAACTACAGTGATGGAAACATTGTTGCTTCTTTGTTGGCACATAAACTGGGTGTCACTCAGTGTACTATTGCTCATGCACTTGAGAAGACCAAGTATCCTGAATCTGATATTTACTGGAAAAAATTTGAAGAGAAGTATCACTTCTCGTGCCAATTTACCGCTGATCTTTTCGCGATGAACCACACCGATTTCATCATCACAAGTACCTTCCAAGAGATTGCTGGAAGCAAGGATACTGTTGGACAGTATGAGAGTCACACTGCTTTCACTCTTCCAGGACTCTACCGTGTTGTGCACGGTATCGATGTCTTTGATCCTAAGTTCAACATTGTGTCTCCAGGAGCTGATCAGACCATTTACTTCCCTTACACCGAAACTAGCCGCAGGTTGACATCGTTCTACCCTGAAATTGAAGAGCTTCTTTACAGCACAGTGGAAAATGAAGAGCACATATGTGTGCTCAAGGACCGCAGCAAGCCGATTATCTTCACCATGGCGAGGTTGGACCGTGTGAAGAACATTACAGGACTAGTTGAGTGGTACGGAAAGAACGCCAAGCTACGTGAGTTGGTGAACCTTGTTGTAGTGGCCGGAGACAGGAGGAAGGAGTCAAAGGACTTGGAAGAGAAAGCTGAGATGAAGAAGATGTATGAACTAATAGAGACCTACAAGTTGAACGGCCAATTCAGATGGATTTCGTCTCAGATGAACCGTGTCAGAAACGGAGAGCTCTACCGTGTAATCTGCGACACAAAAGGAGCTTTCGTGCAGCCTGCTGTGTACGAAGCTTTCGGTCTAACAGTCGTTGAGGCCATGGCCACTGGATTACCAACATTTGCAACACTCAATGGTGGACCTGCTGAGATCATTGTCCATGGAAAATCTGGATTCCACATTGATCCATACCATGGCGACCGCGCTGCTGATCTCCTTGTCGAATTCTTCGAGAAAGTTAAGGCTGATCCATCTCACTGGGACAAGATCTCTCTCGGTGGCCTCCAACGTATTGAAGAGAAGTACACATGGCAAATTTACTCTCAGAGGCTTCTTACACTCACTGGTGTCTATGGTTTCTGGAAACATGTTTCTAACCTCGACCGCCTCGAGAGCCGCCGCTATCTCGAGATGTTCTATGCTCTCAAGTACCGCAAATTGGCTGAGTCTGTGCCTCTAGCTGTTGAGGAGTAA 2421 0.4544 MATERLTRVHSLRERLDETLTANRNEILALLSRIEAKGKGILQHHQVIAEFEEIPEENRQKLTDGAFGEVLRSTQEAIVLPPWVALAVRPRPGVWEYLRVNVHALVVENLQPAEFLKFKEELVDGSANGNFVLELDFEPFTASFPRPTLNKSIGNGVQFLNRHLSAKLFHDKESLHPLLEFLRLHSYKGKTLMLNDRIQNPDSLQHVLRKAEEYLSTVDPETPYSEFEHRFQEIGLERGWGDSAERVLESIQLLLDLLEAPDPCTLETFLDRIPMVFNVVILSPHGYFAQDDVLGYPDTGGQVVYILDQVRALESEMLNRIKKQGLDIVPRILIITRLLPDAVGTTCGQRLEKVYGTEHCHILRVPFRDQKGIVRKWISRFEVWPYLETYTEDVAHELAKELQGKPDLIVGNYSDGNIVASLLAHKLGVTQCTIAHALEKTKYPESDIYWKKFEEKYHFSCQFTADLFAMNHTDFIITSTFQEIAGSKDTVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADQTIYFPYTETSRRLTSFYPEIEELLYSTVENEEHICVLKDRSKPIIFTMARLDRVKNITGLVEWYGKNAKLRELVNLVVVAGDRRKESKDLEEKAEMKKMYELIETYKLNGQFRWISSQMNRVRNGELYRVICDTKGAFVQPAVYEAFGLTVVEAMATGLPTFATLNGGPAEIIVHGKSGFHIDPYHGDRAADLLVEFFEKVKADPSHWDKISLGGLQRIEEKYTWQIYSQRLLTLTGVYGFWKHVSNLDRLESRRYLEMFYALKYRKLAESVPLAVEE 806
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g04224 806 Gene3D Glycogen Phosphorylase B; 280 796 - -
Vifa4g04224 806 Gene3D Glycogen Phosphorylase B; 527 753 - -
Vifa4g04224 806 FunFam Sucrose synthase 146 275 - -
Vifa4g04224 806 Gene3D - 25 145 - -
Vifa4g04224 806 FunFam Sucrose synthase 280 560 - -
Vifa4g04224 806 PANTHER - 7 804 IPR012820 GO:0005985|GO:0016157
Vifa4g04224 806 Pfam Glycosyl transferases group 1 564 728 IPR001296 GO:0016757
Vifa4g04224 806 Pfam Sucrose synthase 8 553 IPR000368 GO:0005985|GO:0016157
Vifa4g04224 806 NCBIfam sucrose synthase 24 802 IPR012820 GO:0005985|GO:0016157
Vifa4g04224 806 Gene3D - 146 275 - -
Vifa4g04224 806 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 295 763 - -
Vifa4g04224 806 FunFam Sucrose synthase 11 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g04224 Vifa-Chr4 1344742955 1344746541 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g04224 2 806 Glycosyltransferase AT3G43190 84.348 0.0 1430
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g04224 K00695 - gmx:547508 1543.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g04224 4 1344742955 1344746541 Vifa4g04224 4 1344742955 1344746541 ECH
Vifa4g04224 4 1344742955 1344746541 Vifa1g08560 1 1349265709 1349269565 PCT