Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g08560 ATGGCGAGTCTCACTCGTTCTACCTCACTCCGTCAGAGGGTTGATGAATCTCTCACTGCTCACAGGAACGAAATTCTGGCTCTTCTCTCAAGAATTGAAGCAAAGGGAAAGGGAATTCTGCAACATCATCAGATCATTGCTGAGTTTGAAGAAATTCCTGAGGAGAATAGGCAGAAGCTTGTTAATGGAGCCTTTGGAGAAGTTTTGAGATCCATTCAGGAAGCTATTGTGTTGGCACCGTTTGTTGCTCTTGCTGTTCGTCCTAGGCCTGGAGTTTGGGAGTATCTGAGAGTCGACGTGCAAGGACTTGTTGTCGATGAACTGAGTGCGGCTGAGTATCTCAAGTTCAAGGAGGAGCTTGTTGAAGGAAGTTCTAATGAAAACTTTGTGCTTGAGTTGGACTTTGAACCTTTCAATGCCTCAATTCCGAAACCAACGCAGAACAAGTCGATTGGAAATGGTGTTGAGTTTCTCAATCGCCATCTTTCTGCTAAGCTTTTCCATGGCAAAGAAAGTTTGCAGCCTCTTCTGGAGTTTCTTAGGCTTCACAACCATAATGGAAAGACTATTATGGTTAATGACAGAATTCAAAATCTGAATTCTCTTCAACATGTTTTGAGAAAAGCAGAAGATTATCTGATCAAGATTGCTCCTGAAACACCGTACTCGGAGTTTGAACACAAATTCCAGGAAATTGGTTTGGAGAGAGGGTGGGGAGACACTGCCGAGCGTGTCGTTGAAACAATCCAACTTCTGTTGGATCTTCTTGATGCACCTGATCCTTGCACCCTCGAGACATTCCTTGGAAGAATCCCTATGGTCTTCAATGTTGTCATCCTTTCTCCACATGGTTATTTCGCCCAAGATAATGTCTTAGGATACCCCGATACCGGTGGCCAGATTGTGTACATCTTGGATCAAGTTCGTGCTTTGGAGGAAGAGATGCTCAAACGTATCAAGCAACAAGGCTTGGATATCACACCTCGCATTCTCATTATCACCCGTCTTCTCCCCGATGCAGTGGGAACTACTTGTGGTCAACGTCTTGAGAAGGTATACAACACTGAATATTGCCACATTCTTCGAGTTCCCTTTAGAACAGAAAAGGGAATTGTTCGCAAATGGATCTCAAGATTTGAAGTCTGGCCTTACCTAGAGACTTTCAGCGAGGATGTCGCAACTGAACTTGCCAAAGAGTTGCAAGGCAAGCCTGATCTGATCGTTGGAAACTACAGCGATGGAAACATCGTTGCCTCTTTGTTAGCACATAAATTAGGTGTAACACAGTGTACTATTGCTCATGCACTCGAGAAGACCAAGTATCCCGACTCTGACATATATTGGAAAAAATTCGATGACAAATATCACTTCTCGTCCCAATTTACTGCTGATCTTTTTGCAATGAACCACACTGACTTTATCATCACAAGTACCTTCCAAGAGATTGCTGGAAGCAAGAATACTGTTGGGCAGTATGAGAGTCACACAGCCTTCACCCTTCCCGGGCTTTACCGTGTTGTTCACGGTATTGATGTCTTTGATCCAAAGTTCAACATTGTCTCTCCCGGAGCTGATTTGAGCATTTACTTCCCATATACCGAAACTGAGCGTAGATTGACATCATTCCACCCTGATATTGAAGAACTTCTCTACAGCTCAGTGGAAAATGAGGAGCACATATGTGTACTGAAGGATCGCAGCAAGCCAATTATCTTCACGATGGCAAGGTTGGACCGAGTAAAAAACATTACAGGGCTTGTTGAGTGGTATGGCAAGAATGCTCGTCTAAGGGAACTGGTAAACCTTGTCGTTGTTGCTGGAGACCGAAGGAAGGAGTCCAAGGATTTAGAAGAGATTGCTGAGATGAAGAAAATGTACGGCCTGATCGAGACCTACAAATTGAACGGCCAATTCAGATGGATTTCCGCACAAATGGACCGAATTAGAAACGGAGAGCTTTACCGTGTCATCTGTGACACAAAGGGTGCTTTTGTGCAGCCAGCTATTTATGAAGCTTTTGGTTTGACTGTCATTGAAGCCATGACTTGTGGATTGCCAACATTTGCCACATGTAATGGTGGTCCTGCTGAGATCATTGTTCATGGAACATCTGGTTACCATATTGATCCTTATCACGGTGACCGTGCTGCCGAGACTCTTGTTGAATTCTTTGAGAAGACTAAGGCTGATCCTACTTACTGGGACAAAATCTCCCATGGAGGTCTCAAACGTATTCACGAGAAGTACACATGGCAGATTTATTCTGACAGGCTTCTGACTCTCACTGGCGTGTATGGCTTCTGGAAGCATGTGACAAACCTCGATCGCCGTGAGAGCAAACGCTACCTTGAGATGTTTTATGCACTCAAATACAGCAAATTGGCTCAATCTGTGCCTCTTGCTGTTGAAGAGTAA 2415 0.4422 MASLTRSTSLRQRVDESLTAHRNEILALLSRIEAKGKGILQHHQIIAEFEEIPEENRQKLVNGAFGEVLRSIQEAIVLAPFVALAVRPRPGVWEYLRVDVQGLVVDELSAAEYLKFKEELVEGSSNENFVLELDFEPFNASIPKPTQNKSIGNGVEFLNRHLSAKLFHGKESLQPLLEFLRLHNHNGKTIMVNDRIQNLNSLQHVLRKAEDYLIKIAPETPYSEFEHKFQEIGLERGWGDTAERVVETIQLLLDLLDAPDPCTLETFLGRIPMVFNVVILSPHGYFAQDNVLGYPDTGGQIVYILDQVRALEEEMLKRIKQQGLDITPRILIITRLLPDAVGTTCGQRLEKVYNTEYCHILRVPFRTEKGIVRKWISRFEVWPYLETFSEDVATELAKELQGKPDLIVGNYSDGNIVASLLAHKLGVTQCTIAHALEKTKYPDSDIYWKKFDDKYHFSSQFTADLFAMNHTDFIITSTFQEIAGSKNTVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADLSIYFPYTETERRLTSFHPDIEELLYSSVENEEHICVLKDRSKPIIFTMARLDRVKNITGLVEWYGKNARLRELVNLVVVAGDRRKESKDLEEIAEMKKMYGLIETYKLNGQFRWISAQMDRIRNGELYRVICDTKGAFVQPAIYEAFGLTVIEAMTCGLPTFATCNGGPAEIIVHGTSGYHIDPYHGDRAAETLVEFFEKTKADPTYWDKISHGGLKRIHEKYTWQIYSDRLLTLTGVYGFWKHVTNLDRRESKRYLEMFYALKYSKLAQSVPLAVEE 804
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g08560 804 FunFam Sucrose synthase 278 543 - -
Vifa1g08560 804 FunFam Sucrose synthase 9 143 - -
Vifa1g08560 804 Pfam Glycosyl transferases group 1 562 727 IPR001296 GO:0016757
Vifa1g08560 804 Gene3D - 23 143 - -
Vifa1g08560 804 FunFam Sucrose synthase 144 273 - -
Vifa1g08560 804 Pfam Sucrose synthase 6 551 IPR000368 GO:0005985|GO:0016157
Vifa1g08560 804 Gene3D - 144 273 - -
Vifa1g08560 804 PANTHER - 5 802 IPR012820 GO:0005985|GO:0016157
Vifa1g08560 804 Gene3D Glycogen Phosphorylase B; 525 751 - -
Vifa1g08560 804 NCBIfam sucrose synthase 22 800 IPR012820 GO:0005985|GO:0016157
Vifa1g08560 804 Gene3D Glycogen Phosphorylase B; 278 793 - -
Vifa1g08560 804 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 293 761 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g08560 Vifa-Chr1 1349265709 1349269565 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g08560 4 804 Glycosyltransferase AT3G43190 82.647 0.0 1405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g08560 K00695 - gmx:100819730 1453.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g08560 1 1349265709 1349269565 Vifa1g08560 1 1349265709 1349269565 ECH
Vifa4g04224 4 1344742955 1344746541 Vifa1g08560 1 1349265709 1349269565 PCT