Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g04122 ATGATGGTGAATGAGTATAAGTACTTATATTTACTTCAAGGTTTAGTGAAAATGAAGAAGTGGTATGGAGGCCTGTTGATCATGGCTTTGGGTATGATGCTGTTTCTACTGTACGGTCTTAAAGGAATTCAGCCACCAAAGCAGTCAACAAAACAGTCGGCATACAGTTTTTTCAATAACAATTTGCCACCAAACGATTCTATTAAAGGAAGCAGCAATGTTGAAGCAGCCTCTTTCAATGCGGAACTGAAAAAGATACCTAAACCAACAAAAAGGCCACATTTGGTACATGTTGCGGGGCTTGATGATCTGTATGACACGAAAAATTTATCCGAAGGAGAGATGAATGTTGTACTTGCTTGGACACATTTACGCTCCTTGCTGTCGAGGTCAGATGCTTTGCCGGAAACAGCTCAAGGAGTCAAAGAGGCTTCTGTAGCATGGAAAGAGTTGCTGACCACCGTTGAAAATGACAAAGCGTCTAAGATTAGTAAGATAGACGGCCCAGAAAATCAAAACTGTCCATTCTCAGTGACCACACTTGGCAAGATGGTAGCAGATAGTGGAATCACTCTGAATCTCCCTTGTGGTTTGATCATAGATTCTTCTATTACATTGATTGGCATCCCTAATGAACAGAACAGTAGCTTTCAGATTGACCTAGCTGGACAAGAGCTAGAAGAGGAGCCATATCCTCCGATTATCTTGCATTATAATGTGGGTCTTCCAGGAGAAAACATGACAGGGGAGCCGTATATTGTTCAAAATACATGGACCAGTGATTTTGGGTGGGGAAAAGAGGAAAGGTGTCCTGCTCGTGGTTCTGCTAACATCCACAAAGTTGATGAGCTTGTTCTCTGCAATGTACAAGCTGTCAGAAATAACAACGAAGAGAATGTAAATGTTGGTCAACCTACTAGCGATATACCTTCTAATATTTCCTCAGAAAGTGCACATAGAACTGGTAATTTCCCTTTTTCTGAGGGTAATCCTTTCACTGCCACATTGTGGGTTGGTTCCGAGGGATTTCATATGACTGTGAATGGAAGGCATGAAACATCTTTTGCATATAGGGAGAAGCTTGAACCATGGTTAGTCAGCACCATAAAAGTCGCAGGAAGTTTAAGTCTCTTCTCGGTTCTTGCTAAAGGCTTACCCGTTACTGAAGGTAATGATATAGTTGTTGATGTTGAGAACCTGAAGGCTCCTTCTATCCTTAGAAAGAGGCATGTTTTGTTGATCGGAGTATTCTCTACTGGAAATAACTTTGAGCGTCGAATGGCTCTGAGGAGGTCTTGGATGCAATATGAGGCTGTACGTTCTGGTGAAGTTGTTGTCAGATTTTTCATTGGACTTCATAAGAATAATAGAGTTAATTTGGAGTTATGGAGAGAAGCTCAAGCATATGGAGATATCCAGTTAATGCCTTTTGTGGATTACTACAGTTTGATATCTTTGAAGACAATTGCAATTTGTATTGTGGGGACGAAAATCATTCCTTCTAAATACATCATGAAAACAGACGATGATGCTTTCGTAAGGATTGACGAAATGCTTTCCAGCCTCAAAGGGAAGTCGTCTGAAGGCCTCTTGTACGGTCTGATATCTTCTAAATCATCTCCTGATAGGGACAAGGACAGCAAGTGGTACATCAGTGAAGAGGAATGGCCATATGATACATACCCACCATGGGCACATGGTCCTGGCTATGTCATCTCTCGCAACATAGCAAAATTCGTCGTCTTTGGCTTCCAGGAAAGAAAACTCCAGTTCTTTAAATTAGAAGATGTTGCCATGGGAATATGGATTGAGCAATTTCGGAATAGTGGTAAAGAAGTGCATTATGAGAATGATGAGAGGTTTTACAATGCTGGATGTGAATCAAATTATATACTTGCACATTATCAAAACCCAAGAATGGTGTTATGCCTTTGGGAGAAACTGCAGAAAGAACACAAGCCTGAATGTTGTGAGTAA 1977 0.4092 MMVNEYKYLYLLQGLVKMKKWYGGLLIMALGMMLFLLYGLKGIQPPKQSTKQSAYSFFNNNLPPNDSIKGSSNVEAASFNAELKKIPKPTKRPHLVHVAGLDDLYDTKNLSEGEMNVVLAWTHLRSLLSRSDALPETAQGVKEASVAWKELLTTVENDKASKISKIDGPENQNCPFSVTTLGKMVADSGITLNLPCGLIIDSSITLIGIPNEQNSSFQIDLAGQELEEEPYPPIILHYNVGLPGENMTGEPYIVQNTWTSDFGWGKEERCPARGSANIHKVDELVLCNVQAVRNNNEENVNVGQPTSDIPSNISSESAHRTGNFPFSEGNPFTATLWVGSEGFHMTVNGRHETSFAYREKLEPWLVSTIKVAGSLSLFSVLAKGLPVTEGNDIVVDVENLKAPSILRKRHVLLIGVFSTGNNFERRMALRRSWMQYEAVRSGEVVVRFFIGLHKNNRVNLELWREAQAYGDIQLMPFVDYYSLISLKTIAICIVGTKIIPSKYIMKTDDDAFVRIDEMLSSLKGKSSEGLLYGLISSKSSPDRDKDSKWYISEEEWPYDTYPPWAHGPGYVISRNIAKFVVFGFQERKLQFFKLEDVAMGIWIEQFRNSGKEVHYENDERFYNAGCESNYILAHYQNPRMVLCLWEKLQKEHKPECCE 658
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g04122 658 PANTHER BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE 349 610 IPR002659 GO:0006486|GO:0016020|GO:0016758
Vifa4g04122 658 CDD GLECT 191 380 IPR001079 GO:0030246
Vifa4g04122 658 Pfam Galactosyltransferase 424 606 IPR002659 GO:0006486|GO:0016020|GO:0016758
Vifa4g04122 658 SMART Gal_bind_lectin_2 194 382 IPR001079 GO:0030246
Vifa4g04122 658 FunFam Beta-1,3-galactosyltransferase GALT1 404 631 - -
Vifa4g04122 658 Gene3D - 188 382 - -
Vifa4g04122 658 Pfam Galactoside-binding lectin 191 381 IPR001079 GO:0030246
Vifa4g04122 658 SUPERFAMILY Concanavalin A-like lectins/glucanases 191 383 IPR013320 -
Vifa4g04122 658 ProSiteProfiles Galactoside-binding lectin (galectin) domain profile. 190 383 IPR001079 GO:0030246
Vifa4g04122 658 Gene3D - 402 654 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g04122 Vifa-Chr4 1312661426 1312665730 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g04122 16 658 Glycosyltransferase AT3G06440 51.084 0.0 631
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g04122 K20843 - gmx:100816729 1073.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g04122 4 1312661426 1312665730 Vifa4g04122 4 1312661426 1312665730 ECH
Vifa4g04122 4 1312661426 1312665730 Vifa1g04989 1 778657747 778661492 PCT