Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g04989 ATGAAGAAGGTAGTAAAACTTGAATTGTTTACATTTTCCAATAGACTCACACTGATTCAAATTTTCATGTTGTTGATGCTTATCTACATGCTCTTCATGAGCTTTGAAATTCCCTTAGCTTTCAAAGCAGGGGTTGGTTCAGAAAAAGTGGCTATTGGGTTTCTCACCGACTCAATGCCGCTTTTGGCTGAAGAAAACCATCAAGAAATTCGACCCTTTGGGTTTCCATTGCAGAAAGTTTCGACTTTGAGCTTCAACAAGAGCTTTGATGGTGCATCAGAGCTTCACAAGGTAGCAAAACAAGCTTACATTTCAGGGAAGAAGTTATGGGAGGAAGTTGAGAGTGGTAAAGTTAAGAGCTTTTCGGGTTTTAAAGCCGAAAACAGTTCGGATACTTGTTTGAATTCGGTTTCAGTTTCTGGGTTTGAGTTTAGAGAGAAGTTGAAAGGGGTTATGGTTTTGCCTTGTGGGTTGACACTTTGGTCTCATGTGACTGTGGTGGGGACACCGCGTTGGGCTCATGGGGAGAGTGATTCGAAGATCGGGGTTGTGAAGGATGGTGATGAAGCTGTGATGGTTTCGCAGTTTATGATGGAGTTGCAGGGTTTGAAAGCTGTTGAGAATGAAGAACCACCGAAGATATTGCATTTTAATCCTAGGCTTAAAGGGGATTGGAGTGGAAAGCCTGTTATTGAGCAGAATACTTGTTATAGGATGCAATGGGGTACTGCTCTTAGGTGTGAGGGATGGAAGTCTCGTGCCGATGACGAAACTGTTGATGGACAGGTGAAATGTGAAAAATGGATTCACGATGATGAGAACCGATCGGAAGAGTGGAAGGCGACATGGTGGTTGAACAGACTAATGGGTCGGAAAAAAGACGTGCATGTGGATTGGCCATATCCTTTTGCTGAAGGGAAGTTATTTGTTCTCACCATAAGTGCTGGCTTGGAAGGTTACCATATTACTGTGGATGGGAGGCATGTGACGTCCTTTCCGTATCGCACAGGCTTTGCTCTTGAGGATGCTACCGGACTATCAATAAACGGGGACGTCGATGTGCACTCTATATACGCTGCTTCCTTACCTACATCACATCCTAGCTTTGCTCCGCAGATGCATCTTGAATTGCTTCCTCAGTGGAAGGCTCCACCTATTCTTGGCGTGAATGTCGAGCTTTTCATTGGTATCCTTTCTGCTGGAAACCATTTTGCTGAACGAATGGCTGTGAGGAAGTCATGGATGCAGCATAAGCTAATCAAATCCTCACGTATTGTGGCTCGGTTTTTCGTAGCCTTGCATGCAAGGAAAGATATAAATGTGGAAATAAAGAAAGAAGCCGAGTATTTCGGCGATATTATTATAGTCCCGTACATGGATCATTATGACCTTGTTGTTTTGAAGACCATAGCTATATGTGAATATGGGATTCGCGCCGTGGCAGCCAAGTATATCATGAAGTGTGATGATGACACATTTGTTAGAGTTGATTCTATCATAAGCGAGACAAGAGAATTTGAAAGTGATGAAAGCCTTTATATGGGAAATATGAATTACCACCACAGGCCTCTTCGCAATGGGAAATGGGCCGTAACCTACGAGGAATGGATAGAGGAAGAATTAAAATTATTTAAAATGGAAGATGTGAGCATGGGAATGTGGGTAGAGAAATTCAACAGCTCAAAAGAAGTAGAGTATGTGCACAGTTTCAGGTTCTGCCAATTCGGCTGCATTGAAGATTACTACACCGCGCATTACCAATCGCCGAGACAAATGGCATGCATGTGGGATAAACTGCAACATCAAGGTAAACCACTTTGCTGCAACATGAGATGA 1836 0.4314 MKKVVKLELFTFSNRLTLIQIFMLLMLIYMLFMSFEIPLAFKAGVGSEKVAIGFLTDSMPLLAEENHQEIRPFGFPLQKVSTLSFNKSFDGASELHKVAKQAYISGKKLWEEVESGKVKSFSGFKAENSSDTCLNSVSVSGFEFREKLKGVMVLPCGLTLWSHVTVVGTPRWAHGESDSKIGVVKDGDEAVMVSQFMMELQGLKAVENEEPPKILHFNPRLKGDWSGKPVIEQNTCYRMQWGTALRCEGWKSRADDETVDGQVKCEKWIHDDENRSEEWKATWWLNRLMGRKKDVHVDWPYPFAEGKLFVLTISAGLEGYHITVDGRHVTSFPYRTGFALEDATGLSINGDVDVHSIYAASLPTSHPSFAPQMHLELLPQWKAPPILGVNVELFIGILSAGNHFAERMAVRKSWMQHKLIKSSRIVARFFVALHARKDINVEIKKEAEYFGDIIIVPYMDHYDLVVLKTIAICEYGIRAVAAKYIMKCDDDTFVRVDSIISETREFESDESLYMGNMNYHHRPLRNGKWAVTYEEWIEEELKLFKMEDVSMGMWVEKFNSSKEVEYVHSFRFCQFGCIEDYYTAHYQSPRQMACMWDKLQHQGKPLCCNMR 611
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g04989 611 FunFam Hydroxyproline O-galactosyltransferase GALT2 274 358 - -
Vifa1g04989 611 CDD GLECT 154 357 IPR001079 GO:0030246
Vifa1g04989 611 FunFam Hydroxyproline O-galactosyltransferase GALT4 149 267 - -
Vifa1g04989 611 SUPERFAMILY Concanavalin A-like lectins/glucanases 152 358 IPR013320 -
Vifa1g04989 611 Pfam Galactosyltransferase 406 540 IPR002659 GO:0006486|GO:0016020|GO:0016758
Vifa1g04989 611 SMART Gal_bind_lectin_2 154 359 IPR001079 GO:0030246
Vifa1g04989 611 Gene3D - 143 358 - -
Vifa1g04989 611 PANTHER BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE 326 561 IPR002659 GO:0006486|GO:0016020|GO:0016758
Vifa1g04989 611 Pfam Galactoside-binding lectin 151 358 IPR001079 GO:0030246
Vifa1g04989 611 ProSiteProfiles Galactoside-binding lectin (galectin) domain profile. 150 360 IPR001079 GO:0030246
Vifa1g04989 611 Gene3D - 389 587 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g04989 Vifa-Chr1 778657747 778661492 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g04989 1 611 Glycosyltransferase AT1G74800 56.677 0.0 778
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g04989 K20843 - gmx:100818349 995.727
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g04989 1 778657747 778661492 Vifa1g04989 1 778657747 778661492 ECH
Vifa4g04122 4 1312661426 1312665730 Vifa1g04989 1 778657747 778661492 PCT