Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g03995 ATGATAGTAGCATTGCTGTTGCTGGTGCTGGCATTGAGCAATGGAGTGAGAGTGAATGGTGAAAGAGGTGGTAGGCAATGTGGGGCGAATCCGTCGCTAAAGCCAAGGCCGCACAGTGTGTCGATTTTGGAGTTTGGTGCAGTGGGAGATGGTAAAACATTGAACACTATTGCATTTCAGAATGCGATATTCTATCTCAAGTCATTTGCGGACAAAGGTGGTGCTCAACTATATGTACCACCTGGAAATTGGCTTACTCAAAGTTTCAATCTCACTAGCCATCTTACACTCTTTTTGGAAAAAGGTGCTGTCATTATTGGATCTCAGGATCCCTATCAATGGGAAGTTGTTGCTCCTTTACCGTCTTATGGTCGAGGACTTGAAGTACCTGGAGGAAGATATCAGAGCTTGATAAATGGATACAAGTTACATGATGTGGTCATAACAGGTCATAATGGAACCATTGATGGCATGGGATTGACTTGGTGGGAATCATTTAGATCCCATTCCTTGAACTATAGCCGTCCTCATCTGGTTGAATTAGTGGCATCTAATGATGTGGTAGTTTCAAATCTTACATTCTTGAATGCCCCTGCGTATAACATTCACCCGGTTTATTGCAGCAATGTACATATTCATAATATCTCAATCTTTGCTCCTCCGGAATCCCCTTATACTGTTGGCATAGTACCAGATTCTTCTGATCATGTTTGCATAGAAGATTGTACCATTGCCACCGGCTATGATGCAATTGCCCTGAAAAGCGGCTGGGATGAGTACGGAATCGCCTACGGTAGGCCTACCGAGAATGTACACATCAGAAGGGTACATCTACAAGCATCTTATGGCTCTACTCTTGCATTTGGAAGTGACATGTCTGGTGGCATTTCAAATGTTGTTGTGGAGCATATTCATCTCCACAACTCAAAAGGTGGCATCGAATTCAGAACTGTTAAAGGAAGAGGTGGTTATATGAAGGAAATAATCATATCCGACGTGGAAATGAAGAACATCTACACAGCAATATCTGCCACAGGTTACTGTGGTTCTCATCCTGATGACAAATTTGATCCTAATGCTTTACCGCTTTTGGATCACTTTATTTTACAAGATATGATTGGAACAAACATCACTATTGCTGGAAGCTTTGCTGGACTAGAAGAATCTCCATTCACTGATATATGCTTATCTAATATAACCTTGTCTGTAAATTATGCTTCCTCCACTACATGGAATTGCTCGAATGTTTCTGGATTTTCAGATTCTGTTTTCCCTATACCTTGTTCCGATCTTGACAACCCTTCGAATTATTCCTCCTCATCTTGTCTCTCCATGTTGAGTATGAAAGGGAAAACTGTGGTGTCTGGCTCGGCGTCGATGAAAAAGTGA 1389 0.419 MIVALLLLVLALSNGVRVNGERGGRQCGANPSLKPRPHSVSILEFGAVGDGKTLNTIAFQNAIFYLKSFADKGGAQLYVPPGNWLTQSFNLTSHLTLFLEKGAVIIGSQDPYQWEVVAPLPSYGRGLEVPGGRYQSLINGYKLHDVVITGHNGTIDGMGLTWWESFRSHSLNYSRPHLVELVASNDVVVSNLTFLNAPAYNIHPVYCSNVHIHNISIFAPPESPYTVGIVPDSSDHVCIEDCTIATGYDAIALKSGWDEYGIAYGRPTENVHIRRVHLQASYGSTLAFGSDMSGGISNVVVEHIHLHNSKGGIEFRTVKGRGGYMKEIIISDVEMKNIYTAISATGYCGSHPDDKFDPNALPLLDHFILQDMIGTNITIAGSFAGLEESPFTDICLSNITLSVNYASSTTWNCSNVSGFSDSVFPIPCSDLDNPSNYSSSSCLSMLSMKGKTVVSGSASMKK 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g03995 462 PANTHER PECTIN LYASE-RELATED 5 440 - -
Vifa4g03995 462 Pfam Pectate lyase superfamily protein 40 97 IPR024535 -
Vifa4g03995 462 Pfam Glycosyl hydrolases family 28 136 417 IPR000743 GO:0004650|GO:0005975
Vifa4g03995 462 SUPERFAMILY Pectin lyase-like 32 430 IPR011050 -
Vifa4g03995 462 SMART pbh1 325 346 IPR006626 -
Vifa4g03995 462 SMART pbh1 234 255 IPR006626 -
Vifa4g03995 462 SMART pbh1 184 206 IPR006626 -
Vifa4g03995 462 SMART pbh1 296 317 IPR006626 -
Vifa4g03995 462 SMART pbh1 268 290 IPR006626 -
Vifa4g03995 462 SMART pbh1 207 233 IPR006626 -
Vifa4g03995 462 Gene3D - 29 422 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g03995 Vifa-Chr4 1277574296 1277577240 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g03995 1 436 Glycoside Hydrolase AT3G06770 63.014 0.0 561
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g03995 - - gmx:100802343 776.933
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g03995 4 1277574296 1277577240 Vifa4g03995 4 1277574296 1277577240 ECH
Vifa4g03995 4 1277574296 1277577240 Vifa1g09412 1 1488618089 1488620640 PCT