Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g09412 ATGCTTGTGGCATTGCTCTTGCTTTTGGCATTGAGCAATGCCTCGAATGTTTATGGCGGTTTTGAGCAGTGTGGTTTGAATCCGAAATTGGATCCTAGACCTCACATGGTCTCTATTTTGGAGTTTGGTGCGGTTGGTGATGGTAAAACATTGAATACACTTGCATTACAGAATGCAATTTTCTATGTCAAGTCATTTGCTGATAAGGGTGGTGCTCAGCTCTACGTGCCACCGGGTAAATGGCTCACTGGTAGTTTCAATCTTACCAGCCATCTCACCCTCTTCTTGGAGAAAGGTGCTGTCATTATTGGATCTCAGGATCCATCTCATTGGGATGTTGTTGAAGCTTTACCTTCGTATGGTCGAGGGAAAGATGTTCCCGAAGGAAGATACAAGAGTTTAATAAACGGTTACAAGTTGGAGGATGTGGTTATAACAGGAAATAACGGAACCATTGATGGCATGGGAATGGTTTGGTGGGAGTGGTATAATTCTCATTCGCTTAACCATAGTCGACCTCATTTGGTCGAAATTATATCATCCGATTCTGTCGTAGTTTCAAATCTTACATTCTTGAATGCTCCAGCATATAGCATCCACCCAGTTTATTGCAGCAATGTGCATATTCAAAACGTTTCAATCTCCACTCCACCAGAATCCCCTTATACCGCCGGTATAGTACCAGATTCTTCTGATAATGTGTGTATAGAAGATTGTTTTGTATCCATTGGATATGATGCAATATCTCTCAAAAGTGGCTGGGATCAGTACGGCATTACTTATGGAAGACCGGCTGAGAAAATACACATAAGAAGGGTCCATCTTCACGCATTTTCCGGCTCTGCAATTTCATTCGGTACTGAAATGTCCGGTGGAATTTCAAATGTTCTAATCGAGCATGTTCACATTGTCAACTCAAATAGTGGCATTGATTTCAGAACAACCAAAGGAAGAGGCGGCTACGTAAAAGAAATTGCTATATCCAACATCGAACTGGAAAATGTTTATACAGCAATTTCAACCAAAGGTAACTGTGGTTCTCATCCCGATGACAAGTTCGATCCAAAAGCACTTCCGCTTTTGAATCACATTACTTTGAAGGATATTATCGGTACAAATATCACAATTGCCGGAAACTTTAGTGGCATAGAGGAATCACCATTCACAGATATCTGCCTTTCAAATATAACCTTGTCCACAAATTCTGTTTCTTCCGTTAAATGGGAATGCTCAAATGTCTCCGGATTCTCAGACTCAGTGTTCCCTAAGCCTTGTCAAGAACTCGACAACCCTTCAAATTCTTCCTCCTCATCGTGTTTCTATCTCACGAGTCCCGGTGAAAACAAATCTGCTGGACTTTAA 1362 0.4141 MLVALLLLLALSNASNVYGGFEQCGLNPKLDPRPHMVSILEFGAVGDGKTLNTLALQNAIFYVKSFADKGGAQLYVPPGKWLTGSFNLTSHLTLFLEKGAVIIGSQDPSHWDVVEALPSYGRGKDVPEGRYKSLINGYKLEDVVITGNNGTIDGMGMVWWEWYNSHSLNHSRPHLVEIISSDSVVVSNLTFLNAPAYSIHPVYCSNVHIQNVSISTPPESPYTAGIVPDSSDNVCIEDCFVSIGYDAISLKSGWDQYGITYGRPAEKIHIRRVHLHAFSGSAISFGTEMSGGISNVLIEHVHIVNSNSGIDFRTTKGRGGYVKEIAISNIELENVYTAISTKGNCGSHPDDKFDPKALPLLNHITLKDIIGTNITIAGNFSGIEESPFTDICLSNITLSTNSVSSVKWECSNVSGFSDSVFPKPCQELDNPSNSSSSSCFYLTSPGENKSAGL 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g09412 453 PANTHER PECTIN LYASE-RELATED 19 442 - -
Vifa1g09412 453 Gene3D - 27 419 IPR012334 -
Vifa1g09412 453 Pfam Glycosyl hydrolases family 28 132 414 IPR000743 GO:0004650|GO:0005975
Vifa1g09412 453 SUPERFAMILY Pectin lyase-like 32 428 IPR011050 -
Vifa1g09412 453 SMART pbh1 293 314 IPR006626 -
Vifa1g09412 453 SMART pbh1 204 230 IPR006626 -
Vifa1g09412 453 SMART pbh1 231 252 IPR006626 -
Vifa1g09412 453 SMART pbh1 265 287 IPR006626 -
Vifa1g09412 453 SMART pbh1 322 343 IPR006626 -
Vifa1g09412 453 SMART pbh1 181 203 IPR006626 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g09412 Vifa-Chr1 1488618089 1488620640 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g09412 1 440 Glycoside Hydrolase AT3G16850 63.265 0.0 566
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g09412 - - gmx:100777503 749.199
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g09412 1 1488618089 1488620640 Vifa1g09412 1 1488618089 1488620640 ECH
Vifa4g03995 4 1277574296 1277577240 Vifa1g09412 1 1488618089 1488620640 PCT