Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g03982 ATGGCCATTGCAAAAAGTGCTTCTATTGTTATTATCTTCTTTGCATTGGCCCATTATGCGGATGCCGCCGTAAGAAATAGGACAGCCGTTGGTCATGATATTTTCGGAGATAGTAATCATGCTAGGGATGTCCTCCTTCCCGGGGAGAAACTAGTTAATGTTGAGAGTTTTGGGGCCAAAGGCGATGGCGTGACTGATTGCACTCAGGCTTTCATGTCAGCATGGCAAGCAACGTGCCATGCTTCGGGACAAAACCGACTTTATATCCCTGCTGGTAGATTTTTGGTTTCTTCAATGTATTTTGCAGGACCTTGTCTGGCTCCAAATCCAATTACAATTCAAGTGGTGGGGACAGTTTTGGCAACCACTGATCCTTCTGAGTATGAAAATGGAGAATGGCTCATGTTTGATCACATCAATGGCCTAAAAATCGTTGGTGGAGGTGTTTTTGATGGACAAGGTCAACAATCATGGGAACACACTGAGAATTGTGAATTATCCAATTCAGAGTGCAAGAGAAATCCCAGCAGTTTGTATTTCCATGATGTCCAAAATGCAATTGTAGCGAACATTAAATCATTGAATCCCAAAGGCTTTCACTTCTTCATCACTGCGTGTTCAAACATTAGGTTGCGTAAACTTAAGATTATTGCACCTGAAACCAGCCCTAACACCGACGGCATTCATATTAGTAACTCCATCAATGTGATTGTTGCTAGAAACACCATTGCAACTGGTGATGATTGTCTCTCTATGATTCAAGGTTGCGAAAATATTTTTATCAACAGACTCAAGTGTGGACCTGGACACGGTATCAGTATTGGTAGTCTTGGAAAGTATCCAGATGAGAGAGAGGTGAAAGGTATTCGCATTAAGAACAGTGCGTTGATTGGTACAACCAATGGTTTGAGAATAAAAACATGGCCTGAGAGATATGGAGGTGGAGCATCAGAGATAAGTTTCAGTAACATTAACATGACCAATGTTCGTAATCCCATCATCATTGATCAGGAGTATGAATGTCATCCAGACTGCAAAAAAAAGCCATCATTGGTGAGGATAGCAGATATTCATTTTGCAAATGTGAGGGGAACAACTGCTACACCAATTGCAGTGGATATGAGATGCAGCGCGCAGTTTCCATGCATGGGTGTTTCGGTTCGCGACATTGACCTGAAGTTTGGAACTGTTCCTTCAACTGCTAGATGTGTGAATGTAAAGCCTGTGTATGGTGGTTTGTTGAACCCACCAGCATGCCCTTAA 1263 0.4236 MAIAKSASIVIIFFALAHYADAAVRNRTAVGHDIFGDSNHARDVLLPGEKLVNVESFGAKGDGVTDCTQAFMSAWQATCHASGQNRLYIPAGRFLVSSMYFAGPCLAPNPITIQVVGTVLATTDPSEYENGEWLMFDHINGLKIVGGGVFDGQGQQSWEHTENCELSNSECKRNPSSLYFHDVQNAIVANIKSLNPKGFHFFITACSNIRLRKLKIIAPETSPNTDGIHISNSINVIVARNTIATGDDCLSMIQGCENIFINRLKCGPGHGISIGSLGKYPDEREVKGIRIKNSALIGTTNGLRIKTWPERYGGGASEISFSNINMTNVRNPIIIDQEYECHPDCKKKPSLVRIADIHFANVRGTTATPIAVDMRCSAQFPCMGVSVRDIDLKFGTVPSTARCVNVKPVYGGLLNPPACP 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g03982 420 Pfam Glycosyl hydrolases family 28 79 407 IPR000743 GO:0004650|GO:0005975
Vifa4g03982 420 SMART pbh1 233 276 IPR006626 -
Vifa4g03982 420 SMART pbh1 286 307 IPR006626 -
Vifa4g03982 420 SMART pbh1 206 232 IPR006626 -
Vifa4g03982 420 SMART pbh1 316 337 IPR006626 -
Vifa4g03982 420 PANTHER - 50 406 - -
Vifa4g03982 420 FunFam Pectin lyase-like superfamily protein 41 417 - -
Vifa4g03982 420 SUPERFAMILY Pectin lyase-like 48 419 IPR011050 -
Vifa4g03982 420 Gene3D - 46 413 IPR012334 -
Vifa4g03982 420 ProSitePatterns Polygalacturonase active site. 263 276 IPR000743 GO:0004650|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g03982 Vifa-Chr4 1274034712 1274036504 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g03982 51 419 Glycoside Hydrolase AT4G18180 43.782 3.29e-103 311
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g03982 K01213 - gmx:100800324 590.882
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g03982 4 1274034712 1274036504 Vifa4g03982 4 1274034712 1274036504 ECH
Vifa4g03982 4 1274034712 1274036504 Vifa1g09395 1 1485082358 1485084522 PCT