Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g09395 ATGGCCACTGCCAAAAAAGTTTCTGTTTTAATTTTATGGTTTGCATTAGTTTGTAATTATGTTGATGCTGTTGGTCTAAGAAAAAGGCCAGTTGCTGGTCCTGATATCTACAAAGGTAAAAATGTAGCCAAAGATGCTCTTGCTCCTGGTGAGAAAGTTGTTAATGTGATGAGTTTTGGAGCAAAACCAGATGGAAAATTTGATTGCACTGAGGCTTTCATGGACGCATGGAGAGCCACCTGCCATACCAACGTACAATCCAGGCTTCTAGTCCCTCAAGGCATATTCCTTGTTTCGACAATGTTCTTTGCAGGCCCATGTGAAACTCCTGGGCCTGTAACAATTCAAGTTGTTGGTACAGTTTTAGCCACATCAGACATTAGCGAGTACGTGAATGGCGAATGGCTCATGTTTCGCGACATAGCAGGCATTAAGCTTATCGGTGGAGGTATCTTCGATGGACAAGGTAAATCTACATGGGAATTTGCTCAAAATTGTGAAACTGATCCAACTGACCAATGTGTTAGGTCTCCTAGTAGCATTTATTTCAATAATGTTACAAATGGACTTATTCAGAACATAAAATCGGTAAATCCAAAAGGGTTTCACTTTTTTGTTACTAACTCCGCAAACATTAGACTTCGATTACTTAAGCTCAACGCGCCAGCTACTAGCCCGAATACCGATGGTCTTCATGTAAGTCATTCAATAAATGTGAAAATATCAAGAAGTACTATCGAAACGGGAGATGATTGCGTCTCCATGATTCAAGGAGTTAACAATGTAAGCATCACAAGAATCAAGTGTGGTCCAGGACACGGTATCAGTATTGGAAGTCTTGGAAAATATCCAGATGAGCTAGAGGTGAAAGGTGTTCGAGTAATGAGGAGCACATTAACGGGCACAGACAATGGTATAAGAATCAAAACATGGCCAGATAAGTATCGAGGAGCAGCATCACAAATCACTTTCAGTAACATCAGTATGGAAAATGTTAAAAATCCTATCATCATTGACCAAGAGTATGAATGTCAACCAAACTGTCAAAAAAAGCCTTCACTTGTAAAGATAAGTGATATAATTTTTAAAAATATAAAAGGAACAACAACTTCTCCAATTGCAGTCGATTTGAGATGTAGCAAGCAATTTCCTTGCCAAAATGTTAGACTTCAAAACATAGACCTTTCACATGGTGCAACTCCTGCTGGCTCTAGATGTGCCAATATCAAACCTATCTATGTTGGCTTGCAAAAACCACCACCTTGTCCATAG 1272 0.3947 MATAKKVSVLILWFALVCNYVDAVGLRKRPVAGPDIYKGKNVAKDALAPGEKVVNVMSFGAKPDGKFDCTEAFMDAWRATCHTNVQSRLLVPQGIFLVSTMFFAGPCETPGPVTIQVVGTVLATSDISEYVNGEWLMFRDIAGIKLIGGGIFDGQGKSTWEFAQNCETDPTDQCVRSPSSIYFNNVTNGLIQNIKSVNPKGFHFFVTNSANIRLRLLKLNAPATSPNTDGLHVSHSINVKISRSTIETGDDCVSMIQGVNNVSITRIKCGPGHGISIGSLGKYPDELEVKGVRVMRSTLTGTDNGIRIKTWPDKYRGAASQITFSNISMENVKNPIIIDQEYECQPNCQKKPSLVKISDIIFKNIKGTTTSPIAVDLRCSKQFPCQNVRLQNIDLSHGATPAGSRCANIKPIYVGLQKPPPCP 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g09395 423 ProSitePatterns Polygalacturonase active site. 266 279 IPR000743 GO:0004650|GO:0005975
Vifa1g09395 423 FunFam Pectin lyase-like superfamily protein 42 420 - -
Vifa1g09395 423 SUPERFAMILY Pectin lyase-like 50 422 IPR011050 -
Vifa1g09395 423 Gene3D - 41 419 IPR012334 -
Vifa1g09395 423 PANTHER - 52 408 - -
Vifa1g09395 423 Pfam Glycosyl hydrolases family 28 81 410 IPR000743 GO:0004650|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g09395 Vifa-Chr1 1485082358 1485084522 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g09395 53 422 Glycoside Hydrolase AT4G18180 43.928 7.17e-105 315
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g09395 K01213 - gmx:106796220 671.389
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g09395 1 1485082358 1485084522 Vifa1g09395 1 1485082358 1485084522 ECH
Vifa4g03982 4 1274034712 1274036504 Vifa1g09395 1 1485082358 1485084522 PCT