Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g03946 ATGGATGAACCTAGCCAACTGAAACGTGCTATTGTTGATTCATCTGCTGGAGCAATTTCTGGGGGAATTTCTCGTACTGTAACATCACCTCTTGATGTTATTAAGATTAGATTTCAGGTTCAACTTGAACCAACGTCATCATGGGCTTTACTGCGAAAAGATTTGGTTCTAACCGCGCCGTCGAAGTATACTGGTATGCTGCAAGCTAGTAAAGATATTCTTAGAGAAGAAGGCTTGAAGGGTTTTTGGCGAGGGAATGTGCCAGCTTTGCTCATGGTTATGCCGTATACAGCAATTCAGTTTACAGTTTTACACAAGTTAAAGACTCTTGCATCTGGCTCTTCCAGGACAGAAAACCACACTAATTTGAGCCCTTATCTATCCTATGTCAGTGGCGCCCTAGCTGGGTGTGCAGCTACTGTTGGTTCATATCCTTTTGATCTTCTCCGAACCATATTAGCTTCTCAAGGCGAGCCAAAGGTGTATCCAAACATGAGGTCAGCATTTATGGACATCATCCAGACTCGTGGATTCCAAGGCATGTATGCTGGATTATCTCCAACTCTAGTTGAGATTGTACCTTATGCAGGTTTACAATTTGGAACATACGATACTTTTAAGCGTTGGGCCTCGGCTTGGAACCATAATAGATATTCCCACACCACAGGAGATGATAGTATTTCTAGCTTTCAGCTTTTCCTTTGCGGGTTGGCGGCTGGAACATGTGCAAAACTTGTCTGTCATCCTCTCGATGTTGTCAAGAAAAGATTTCAGATTGAAGGGCTTCAAAGGCATCCAAGATACGGAGCTCGAGTTGAGCATCGAGCATACAGTAATATGTATGATGCCGTGCATAGGATATTTCAGTCCGAGGGTTGGGCTGGACTATACAAGGGGATAATTCCATCAACTATTAAAGCTGCACCTGCTGGTGCTGTCACATTTGTTGCATATGAGTTGGTATCAGATTGGCTAGAGTCTTTGACTTGA 990 0.4343 MDEPSQLKRAIVDSSAGAISGGISRTVTSPLDVIKIRFQVQLEPTSSWALLRKDLVLTAPSKYTGMLQASKDILREEGLKGFWRGNVPALLMVMPYTAIQFTVLHKLKTLASGSSRTENHTNLSPYLSYVSGALAGCAATVGSYPFDLLRTILASQGEPKVYPNMRSAFMDIIQTRGFQGMYAGLSPTLVEIVPYAGLQFGTYDTFKRWASAWNHNRYSHTTGDDSISSFQLFLCGLAAGTCAKLVCHPLDVVKKRFQIEGLQRHPRYGARVEHRAYSNMYDAVHRIFQSEGWAGLYKGIIPSTIKAAPAGAVTFVAYELVSDWLESLT 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g03946 329 ProSiteProfiles Solute carrier (Solcar) repeat profile. 123 209 IPR018108 -
Vifa4g03946 329 PANTHER SOLUTE CARRIER FAMILY 25 14 325 - -
Vifa4g03946 329 SUPERFAMILY Mitochondrial carrier 10 321 IPR023395 -
Vifa4g03946 329 FunFam Mitochondrial thiamine pyrophosphate carrier 1 4 327 - -
Vifa4g03946 329 ProSiteProfiles Solute carrier (Solcar) repeat profile. 8 110 IPR018108 -
Vifa4g03946 329 Gene3D Mitochondrial carrier domain 5 327 IPR023395 -
Vifa4g03946 329 Pfam Mitochondrial carrier protein 226 325 IPR018108 -
Vifa4g03946 329 Pfam Mitochondrial carrier protein 13 111 IPR018108 -
Vifa4g03946 329 Pfam Mitochondrial carrier protein 123 209 IPR018108 -
Vifa4g03946 329 ProSiteProfiles Solute carrier (Solcar) repeat profile. 227 324 IPR018108 -
Vifa4g03946 329 PRINTS Mitochondrial carrier protein signature 85 105 IPR002067 GO:0055085
Vifa4g03946 329 PRINTS Mitochondrial carrier protein signature 13 26 IPR002067 GO:0055085
Vifa4g03946 329 PRINTS Mitochondrial carrier protein signature 236 258 IPR002067 GO:0055085
Vifa4g03946 329 PRINTS Mitochondrial carrier protein signature 26 40 IPR002067 GO:0055085
Vifa4g03946 329 PRINTS Mitochondrial carrier protein signature 138 156 IPR002067 GO:0055085
Vifa4g03946 329 PRINTS Mitochondrial carrier protein signature 182 200 IPR002067 GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g03946 Vifa-Chr4 1263521092 1263523890 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g03946 1 327 Organic Solute Cotransporters AT3G21390 74.096 0.0 513
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g03946 K15108 - gmx:100784986 587.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g03946 4 1263521092 1263523890 Vifa1g09282 1 1468762958 1468769706 PCT