Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g09282 ATGGCAATGAAGGAGGAGACAAGTCAGTGGAAGCAGGCTACGATTAATTCCACAGCTGGGGCTATATCTGGTGCTATTTCACGGACAGTGACGTCACCTCTTGATGTTATTAAAATTAGATTCCAGGTTCAACTAGAGCCCACTTCCTCTTGGAAGTCACTACGCAGGGATTTGTCTAAACCCTCAAAATATACTGGCATGTTTCAAGCAACCAAAGATATTTTTAGAGAAGAAGGCATACGGGGTTTTTGGCGGGGCAATGTGCCAGCTTTGCTCATGGTTATGCCATATACAGCTATACAGTTTACTGTTTTGCATACATTGAAGACTTTTGCCTCTGGTTCATCCAAGACAGAGAATCACATTAATCTGAGCCCTTATCTATCCTATGTAAGTGGGGCATTAGCTGGGTGTGCAGCTACTGTGGGGTCATATCCATTTGATCTTCTTCGAACTATATTAGCTTCTCAGGGTGAACCAAAGGTTTATCCAAACATGAGGTCAGCATCCATTGATATTCTCAGGACTCGTGGGTTTCGAGGCTTGTATTCCGGATTGTCACCAACACTAGTTGAGATTATACCTTATGCAGGCCTACAATTCGGCACTTATGATACATTCAAACGTTGGGCCATGGCATGGAACCATGCTCAATATTCAAATACTGCTGCAGAAGAGAGCCTCTCTAGCTTTCAGCTTTTCCTGTGTGGGCTAGCAGCAGGAACATGTGCCAAGCTTGTTTGTCATCCACTTGATGTAGTCAAGAAAAGATTTCAGATTGAAGGTCTACAAAGGCATCCAAGATATGGAGCTCGGCTTGAACATCGTGCATATAAAAATATGTTTGACGGCTTGAAACAGATATTACAGATGGAGGGTTGGGCTGGTTTGTATAAGGGGATAGTTCCATCTACTATTAAAGCTGCACCAGCTGGTGCTGTAACTTTTGTTGCTTATGAATTGACATCAGATTGGCTGGAGTCTATTTTGACATGA 996 0.4297 MAMKEETSQWKQATINSTAGAISGAISRTVTSPLDVIKIRFQVQLEPTSSWKSLRRDLSKPSKYTGMFQATKDIFREEGIRGFWRGNVPALLMVMPYTAIQFTVLHTLKTFASGSSKTENHINLSPYLSYVSGALAGCAATVGSYPFDLLRTILASQGEPKVYPNMRSASIDILRTRGFRGLYSGLSPTLVEIIPYAGLQFGTYDTFKRWAMAWNHAQYSNTAAEESLSSFQLFLCGLAAGTCAKLVCHPLDVVKKRFQIEGLQRHPRYGARLEHRAYKNMFDGLKQILQMEGWAGLYKGIVPSTIKAAPAGAVTFVAYELTSDWLESILT 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g09282 331 ProSiteProfiles Solute carrier (Solcar) repeat profile. 124 210 IPR018108 -
Vifa1g09282 331 PRINTS Mitochondrial carrier protein signature 139 157 IPR002067 GO:0055085
Vifa1g09282 331 PRINTS Mitochondrial carrier protein signature 183 201 IPR002067 GO:0055085
Vifa1g09282 331 PRINTS Mitochondrial carrier protein signature 29 43 IPR002067 GO:0055085
Vifa1g09282 331 PRINTS Mitochondrial carrier protein signature 86 106 IPR002067 GO:0055085
Vifa1g09282 331 PRINTS Mitochondrial carrier protein signature 16 29 IPR002067 GO:0055085
Vifa1g09282 331 PRINTS Mitochondrial carrier protein signature 237 259 IPR002067 GO:0055085
Vifa1g09282 331 FunFam Mitochondrial thiamine pyrophosphate carrier 1 7 328 - -
Vifa1g09282 331 SUPERFAMILY Mitochondrial carrier 11 320 IPR023395 -
Vifa1g09282 331 ProSiteProfiles Solute carrier (Solcar) repeat profile. 11 111 IPR018108 -
Vifa1g09282 331 Gene3D Mitochondrial carrier domain 7 328 IPR023395 -
Vifa1g09282 331 Pfam Mitochondrial carrier protein 10 112 IPR018108 -
Vifa1g09282 331 Pfam Mitochondrial carrier protein 228 326 IPR018108 -
Vifa1g09282 331 Pfam Mitochondrial carrier protein 125 211 IPR018108 -
Vifa1g09282 331 ProSiteProfiles Solute carrier (Solcar) repeat profile. 228 325 IPR018108 -
Vifa1g09282 331 PANTHER SOLUTE CARRIER FAMILY 25 6 326 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g09282 Vifa-Chr1 1468762958 1468769706 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g09282 5 331 Organic Solute Cotransporters AT3G21390 74.924 0.0 514
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g09282 K15108 - gmx:100783563 586.645
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g09282 1 1468762958 1468769706 Vifa1g09282 1 1468762958 1468769706 ECH
Vifa4g03946 4 1263521092 1263523890 Vifa1g09282 1 1468762958 1468769706 PCT