Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g02978 ATGAGAAACGACTCTCCCTACACTCCTCTTCTCAATGCCTCCCACAATAACCACCGCCGTAGAGAGCTTCTTCTTCTATTTTCCGGTTTGCTTTTACTTGCTTCGATAATCGCTTTTAGCGGCTACGTCGCTCAACCTCATGCTGACGCTGACGTCTCATCTTCATCGTCGATATTGTCCGATGAAGCAACGAGACCGACCACGCTTTCGCGAGGTGTTTCTTCCGGTGTGTCGGAGAAGTCAAACACGTTTCTTCTCTCTGGTAACCTTGTTGGAGAAGGTGGATCGTTTCCTTGGAATAATACTATGTTGTCGTGGCAGAGAACAGCTTTTCATTTTCAGCCAGAAAAGAATTGGATGAATGATCCCAACGGTCCATTGTATTACAAGGGATGGTACCATTTTTTCTACCAATACAATCCAAACGGCGCAGTTTGGGGAGACATAGTTTGGGGCCATGCAGTGTCAAGAGACTTGATTCATTGGCTTCACCTTCCACTAGCAATGGTGGCGGATCAATGGTACGACAGTAACGGTGTTTGGACAGGCTCTGCTACCATCTTACCTGACGGTCAAGTCATCATGTTATATACCGGTTCGACAAACGAGTTCGTGCAAGTTCAAAACCTTGCATACCCTGCTGATCTCAATGACCCTCTTCTTGTGGACTGGATCAAATACCCTTCCAACCCGGTTCTCGTCCCTCCACCAGGGATCCTTCCGAAGGACTTTCGCGACCCGACAACAGCTTGGCTTACTACAGAAGGAAAGTGGCGAATCACCATAGGCTCCAAGATAAACAAAACTGGTGTTGCATTGGTTTATGATACAGTGGATTTCAAGACCTATGAGCGTAAAGACATGTTGCTTAATGCTGTTCCTGGTACTGGTATGTGGGAGTGTGTGGACTTTTTCCCTGTTTCTATGAAGTCTGAAAATGGTTTGGATACTTCCTTTACCGGTGACGAGGTTAAGCATGTGATGAAGGTGAGTTTGGATGATGATAGACATGATTATTACGCATTAGGGACTTATGATGAGAAGAAGGTTAAGTTTATAGCAGATGATTTTGAAAATGATGTTGGTATTGGATTGAGGTATGATTATGGTATATTCTATGCTTCCAAGACATTTTATGATCAGAAAAAGGATAGGAGAGTGTTGTGGGGTTGGATTGGAGAATCAGATAGCGAATACGCTGATGTTGCCAAAGGTTGGGCTTCAGTTCAGAGCATTCCAAGAATTGTGAAGCTTGATAAGAAGACTGGTAGCAACTTACTTCAATGGCCTGTTGCGGAAGTGGAGAGTTTGAGATTAAGAAGTGATGAATTCCAAAACTTGAAGGTTAAGCCAGGAGCAGTGGTGTCAGTAGATATTGAAACTGCCACACAGTTGGACATTGTAGCTGAGTTTGAGATAGACAAGGAAGCTCTAGAGAAAACAGCTCAATCCAATGTGGAGTATGAGTGCAACACCAGTGGCGGAGCTTCCCGTCGTGGTGCCTTAGGACCTTTTGGTCTTTATGTTTTGGCAGATAATGGTCTTTCTGAGTACACTCCTGTGTACTTTTATGTTGTTAAAGGAATCAATGGAAAACTTCATACTTCTTTCTGTTCTGATCAATCAAGGTCTTCTCTCGCAAATGATGTTCATAAACAAATCTATGGGAGTGTAGTTCCTGTACTTGAAGGAGAAAAATTGTCCCTAAGGATATTGGTGGACCATTCTATAGTTGAAAGCTTTGCTCAAGGTGGAAGAACATGTATAACGTCAAGAGTTTATCCAACAAGAGCAATTTATGGAGCAGCTCGATTGTTCTTATTTAACAATGCTATAGAAACCAATGTCACAGCCTCTCTCAAAGTTTGGCAGATGAATTCAGCCTTTATACGCCCATACCATCCGGATCAAAAGAGGCAAACAAGTTAA 1929 0.4318 MRNDSPYTPLLNASHNNHRRRELLLLFSGLLLLASIIAFSGYVAQPHADADVSSSSSILSDEATRPTTLSRGVSSGVSEKSNTFLLSGNLVGEGGSFPWNNTMLSWQRTAFHFQPEKNWMNDPNGPLYYKGWYHFFYQYNPNGAVWGDIVWGHAVSRDLIHWLHLPLAMVADQWYDSNGVWTGSATILPDGQVIMLYTGSTNEFVQVQNLAYPADLNDPLLVDWIKYPSNPVLVPPPGILPKDFRDPTTAWLTTEGKWRITIGSKINKTGVALVYDTVDFKTYERKDMLLNAVPGTGMWECVDFFPVSMKSENGLDTSFTGDEVKHVMKVSLDDDRHDYYALGTYDEKKVKFIADDFENDVGIGLRYDYGIFYASKTFYDQKKDRRVLWGWIGESDSEYADVAKGWASVQSIPRIVKLDKKTGSNLLQWPVAEVESLRLRSDEFQNLKVKPGAVVSVDIETATQLDIVAEFEIDKEALEKTAQSNVEYECNTSGGASRRGALGPFGLYVLADNGLSEYTPVYFYVVKGINGKLHTSFCSDQSRSSLANDVHKQIYGSVVPVLEGEKLSLRILVDHSIVESFAQGGRTCITSRVYPTRAIYGAARLFLFNNAIETNVTASLKVWQMNSAFIRPYHPDQKRQTS 642
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g02978 642 Pfam Beta-fructofuranosidase, N-terminal domain 7 104 IPR021792 GO:0004564
Vifa4g02978 642 SUPERFAMILY Concanavalin A-like lectins/glucanases 430 629 IPR013320 -
Vifa4g02978 642 Gene3D Glycosyl hydrolase domain; family 43 116 441 IPR023296 -
Vifa4g02978 642 PANTHER BETA-FRUCTOFURANOSIDASE, INSOLUBLE ISOENZYME CWINV1-RELATED 101 628 - -
Vifa4g02978 642 SMART glyco_32 112 585 IPR001362 GO:0004553|GO:0005975
Vifa4g02978 642 Pfam Glycosyl hydrolases family 32 N-terminal domain 112 430 IPR013148 -
Vifa4g02978 642 ProSitePatterns Glycosyl hydrolases family 32 active site. 112 125 IPR018053 GO:0004553|GO:0005975
Vifa4g02978 642 FunFam Beta-fructofuranosidase, insoluble isoenzyme CWINV1 116 442 - -
Vifa4g02978 642 SUPERFAMILY Arabinanase/levansucrase/invertase 105 431 IPR023296 -
Vifa4g02978 642 CDD GH32_Fruct1-like 118 418 - -
Vifa4g02978 642 Pfam Glycosyl hydrolases family 32 C terminal 433 624 IPR013189 -
Vifa4g02978 642 Gene3D - 442 625 - -
Vifa4g02978 642 FunFam Beta-fructofuranosidase, insoluble isoenzyme CWINV1 442 625 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g02978 Vifa-Chr4 952508456 952512720 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g02978 6 642 Glycoside Hydrolase AT1G12240 65.644 0.0 852
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g02978 K01193 - gmx:100788844 1018.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g02978 4 952508456 952512720 Vifa4g02978 4 952508456 952512720 ECH
Vifa1g07753 1 1210040645 1210043318 Vifa4g02978 4 952508456 952512720 PCT