Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g07753 ATGACGCAAACCGATAACTCAAACGATATAGATTGTTCATATGTCCCCGTACCCGGAGAACCTCACACCGTTGAAGCTCCGGCCGAGAGCCGTGGAAAGTTGAAGGCGGGGATTGTGATCTTTTGTGGATTGTTATCGCTAGCTTCCTTAGTAGCATACACTGGTTACATTGCACCAAATAACAAAAGCGATGAGTTATATTCAACATTAAAATCTCATTCAAATGAAGATAAATATAAAACAATACCTTTTCGTAAATGGGAACCGGTTTCAAGAGGCGTGTCTGTTGGTGTTTCAGAGAAATCCAATAGGATGTTCAAAACCAAGACCAATGTACGAACTTATCCTTGGAATAACCATATGTTATCATGGCAGAGAACCGCTTTTCATTTCCAGCCGAAACATAATTGGATGAATGATCCTAACGGTCCATTGTACTACAAGGGTCGGTATCATTTTTTCTACCAATACAATCCAAATGGCGCGGTTTGGGGTGACATAGTATGGGGACATGCAGTCTCAAAAGACTTGGTTCATTGGCTTCATCTTCCACTAGCAATGGTAGCAGATGAATGGTATGATCTAAATGGTGTGTGGACAGGTTCTGCTACAATATTACCAAATGGTGAACTCGTCATGTTATATACTGGTGCAACAAATGAATCAATACAAGTACAAAACCTTGCATACCCTGCCAATACTTCGGATCCACTCCTAGTTAATTGGACCAAATACTCGGAAAATCCAGTTCTATTCCCACCCCCTGAAGTTAATTTCATTGATTTTCGTGATCCGACCACGGCTTGGCTTACCTCTCAAGGTAAATGGCGTATTTCAATTGGTTCTAAGATTAACGAAACCGGTGTAGCTTTGGTTTATGATACCAAAGATTTCAAGACTTTTGAGCGTGTGGAGGGTATGCTTCGTCGTGTGCAAGAAACTGGCATGTGGGAATGTGTTGATTTTTTTCCTGTGTCAACTAAATTGGATAACGGATTGGATACTTCTGTTAATGATGATGGTGTTAAACATGTGATGAAGGTTAGCTTGGATGAAGAAAGACATGATTATTATGCTATTGGAACTTATAATGAAAGTATTGCTGATTTCGTACCCGATGATATTAATAAAGATGTTGGTATTGGATTGAGGTATGATTATGGTGTATTTTATGCTTCCAAGACATTTTATGACCAAAGTAAAAAGAGAAGAGTATTGTGGAGTTGGGTTGCTGAGTCTGATAGTGAATATGTTGATGTCGAAAAAGGTTGGGCATCACTTATGGGTATTCCGAGGACACTGGTGCTCGACAAGAAAACGGGTAGCAACTTACTTCAATGGCCTGTTAAGGAGGTGGAGAGTTTGAGAACCAAAAGTCACAAGTTTGAAAATTTGCAGGTGAAGCCAGGGTCAATTGTATCCCTAGATATTGGAACAGCAACTCAGTTAGACATTTTAGCTGAGTTTAATATTGATGAAAAAGCTATAAACAAGACAAGGGAGACCAATGTGGAGTACAATTGTGAAACTAGTGATGGAGCTCGTGCTCGTGGCGTGTTAGGACCTTTTGGTTTATTGGTTCTAGCAAACGATAATCTTTCTGAAAAAACTCCTATTTACTTTTATGTTGTTAAAGGAAGAGACGGAAATCTCAAAACTTCCTTCTGTTCTGATCAATCTAGGTCTTCTTTGGCAACTGATGTTAGTAAGAAAATCTTTGGAAGCTTAGTCCCAGTGCTTCAAGATGAGAAGCTATCTCTAAGAATATTGGTGGATCATTCTATTATTGAAAGCTTTGCTCAAGGTGGAAGAACATGTGTGACTTCTAGGGTTTATCCAACAAAAGCAATCTATCGAAAAGCTAGATTGTTCTTGTTTAATAATGCTACTGAGGCCACTGTTTATGCTTCACTTGAAGTTTGGCATATGAAGTCTGCATCCAAAAAGCCATTCCATTACGATCAAATGAGTTAA 1974 0.3916 MTQTDNSNDIDCSYVPVPGEPHTVEAPAESRGKLKAGIVIFCGLLSLASLVAYTGYIAPNNKSDELYSTLKSHSNEDKYKTIPFRKWEPVSRGVSVGVSEKSNRMFKTKTNVRTYPWNNHMLSWQRTAFHFQPKHNWMNDPNGPLYYKGRYHFFYQYNPNGAVWGDIVWGHAVSKDLVHWLHLPLAMVADEWYDLNGVWTGSATILPNGELVMLYTGATNESIQVQNLAYPANTSDPLLVNWTKYSENPVLFPPPEVNFIDFRDPTTAWLTSQGKWRISIGSKINETGVALVYDTKDFKTFERVEGMLRRVQETGMWECVDFFPVSTKLDNGLDTSVNDDGVKHVMKVSLDEERHDYYAIGTYNESIADFVPDDINKDVGIGLRYDYGVFYASKTFYDQSKKRRVLWSWVAESDSEYVDVEKGWASLMGIPRTLVLDKKTGSNLLQWPVKEVESLRTKSHKFENLQVKPGSIVSLDIGTATQLDILAEFNIDEKAINKTRETNVEYNCETSDGARARGVLGPFGLLVLANDNLSEKTPIYFYVVKGRDGNLKTSFCSDQSRSSLATDVSKKIFGSLVPVLQDEKLSLRILVDHSIIESFAQGGRTCVTSRVYPTKAIYRKARLFLFNNATEATVYASLEVWHMKSASKKPFHYDQMS 657
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g07753 657 ProSitePatterns Glycosyl hydrolases family 32 active site. 130 143 IPR018053 GO:0004553|GO:0005975
Vifa1g07753 657 Gene3D - 461 643 - -
Vifa1g07753 657 FunFam Beta-fructofuranosidase, insoluble isoenzyme CWINV1 134 460 - -
Vifa1g07753 657 PANTHER BETA-FRUCTOFURANOSIDASE, INSOLUBLE ISOENZYME CWINV1-RELATED 119 647 - -
Vifa1g07753 657 Pfam Glycosyl hydrolases family 32 C terminal 451 642 IPR013189 -
Vifa1g07753 657 CDD GH32_Fruct1-like 136 436 - -
Vifa1g07753 657 Pfam Glycosyl hydrolases family 32 N-terminal domain 130 448 IPR013148 -
Vifa1g07753 657 Pfam Beta-fructofuranosidase, N-terminal domain 13 122 IPR021792 GO:0004564
Vifa1g07753 657 SUPERFAMILY Concanavalin A-like lectins/glucanases 448 646 IPR013320 -
Vifa1g07753 657 FunFam Beta-fructofuranosidase, insoluble isoenzyme CWINV1 460 643 - -
Vifa1g07753 657 Gene3D Glycosyl hydrolase domain; family 43 135 460 IPR023296 -
Vifa1g07753 657 SMART glyco_32 130 603 IPR001362 GO:0004553|GO:0005975
Vifa1g07753 657 SUPERFAMILY Arabinanase/levansucrase/invertase 123 449 IPR023296 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g07753 Vifa-Chr1 1210040645 1210043318 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g07753 12 651 Glycoside Hydrolase AT1G12240 58.436 0.0 780
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g07753 K01193 - gmx:100798772 965.296
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g07753 1 1210040645 1210043318 Vifa1g07753 1 1210040645 1210043318 ECH
Vifa1g07753 1 1210040645 1210043318 Vifa4g02978 4 952508456 952512720 PCT