Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g02944 ATGCACAAAAGCAGTTCCGGTTCACTAGGCCCAGATGGCCTCGACTTAACCAAAGCCTTCTTCAAACCCATCTCCAACGCATCCCCTCCCTCTCTCACCAAACGCCACAACAAAATCTCCGTCATCGGCGCCGGAAACGTCGGAATGGCCATCGCTCAGACCATCCTCACTCAAGACCTCACCGACGAGCTCGTCATCGTCGATAACAAACCCGACAAGCTCCGCGGCGAGATGCTCGACCTTCAACACGCAGCTGCTTTCCTCCCCCGAGTCAAGATCAACTCTTCCGTCGAATACTCCGTCACCGCCGGCTCTGATCTATGCGTCGTTACCGCCGGTGCACGACAGATCGCTGGCGAGTCCAGGCTTAACCTTCTCCAGAGGAACCTCGCTCTCTTTAAGGGAATTATACCCGTTCTGGCACGTTACTCGCCGGAAACGGTTCTCATTATCGTGTCTAACCCCGTCGACGTTCTCACCTACATCGCTTGGAAGCTTTCCGGGTTTCCGTCGAACCGGATCATCGGGTCGGGTACCAATTTGGATTCGTCTCGCTTTCGTTTTCTCATTGCTGATCACCTTCAGGTCAACGCTCAGGATGTTCAGGCCTGCATAGTAGGGGAGCATGGGGATAGTTCAGTGGCATTATGGTCAAGTATTAGCATTGGTGGTGTTCCTGTGCTGAGTTTTTTGGAGAAACAGCAAATTGCTTATGAGAAAGAGACACTGGAGAATATACACAAGCAAGTGATTGACAGTGCTTATGAAGTAATCAGTCTAAAAGGCTACACTTCATGGGCTATTGGGTACTCTGTGGCTAGTTTGGCTCGGTCGATTATTAGGGATCAAAGGAAGATCCACCCTGTGTCTGTTTTGGCTAAGGGGTTTTATGGCATTGGTGATGTTGAAGTGTTTTTGAGCTTGCCGGCACAGCTTGGTAGAGGTGGGGTTCTTGGTGTGACCAATGTGCACATGAATCAAGAGGAGGAACAGAGGCTTAGGGACTCTGCTAAAACCATCTTGGAGGTTCAGACTCAATTGGGTATTTGA 1050 0.5057 MHKSSSGSLGPDGLDLTKAFFKPISNASPPSLTKRHNKISVIGAGNVGMAIAQTILTQDLTDELVIVDNKPDKLRGEMLDLQHAAAFLPRVKINSSVEYSVTAGSDLCVVTAGARQIAGESRLNLLQRNLALFKGIIPVLARYSPETVLIIVSNPVDVLTYIAWKLSGFPSNRIIGSGTNLDSSRFRFLIADHLQVNAQDVQACIVGEHGDSSVALWSSISIGGVPVLSFLEKQQIAYEKETLENIHKQVIDSAYEVISLKGYTSWAIGYSVASLARSIIRDQRKIHPVSVLAKGFYGIGDVEVFLSLPAQLGRGGVLGVTNVHMNQEEEQRLRDSAKTILEVQTQLGI 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g02944 349 Gene3D - 179 347 IPR015955 GO:0003824|GO:0016616
Vifa4g02944 349 FunFam Malate dehydrogenase 32 178 - -
Vifa4g02944 349 PRINTS L-lactate dehydrogenase signature 150 170 IPR001557 GO:0016616|GO:0019752
Vifa4g02944 349 PRINTS L-lactate dehydrogenase signature 63 87 IPR001557 GO:0016616|GO:0019752
Vifa4g02944 349 PRINTS L-lactate dehydrogenase signature 38 62 IPR001557 GO:0016616|GO:0019752
Vifa4g02944 349 PRINTS L-lactate dehydrogenase signature 174 192 IPR001557 GO:0016616|GO:0019752
Vifa4g02944 349 PRINTS L-lactate dehydrogenase signature 204 217 IPR001557 GO:0016616|GO:0019752
Vifa4g02944 349 PANTHER L-2-HYDROXYCARBOXYLATE DEHYDROGENASE (NAD(P)(+)) 17 347 - -
Vifa4g02944 349 SUPERFAMILY LDH C-terminal domain-like 177 346 IPR015955 GO:0003824|GO:0016616
Vifa4g02944 349 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 23 176 IPR036291 -
Vifa4g02944 349 PIRSF Lac_mal_DH 33 349 IPR001557 GO:0016616|GO:0019752
Vifa4g02944 349 Hamap L-lactate dehydrogenase [ldh]. 36 348 IPR011304 GO:0004459|GO:0005737
Vifa4g02944 349 Gene3D - 20 178 - -
Vifa4g02944 349 Pfam lactate/malate dehydrogenase, alpha/beta C-terminal domain 179 342 IPR022383 GO:0016616
Vifa4g02944 349 Pfam lactate/malate dehydrogenase, NAD binding domain 38 176 IPR001236 GO:0016491
Vifa4g02944 349 CDD LDH_1 34 346 - -
Vifa4g02944 349 NCBIfam L-lactate dehydrogenase 41 340 IPR011304 GO:0004459|GO:0005737
Vifa4g02944 349 ProSitePatterns L-lactate dehydrogenase active site. 206 212 IPR018177 GO:0004459
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g02944 Vifa-Chr4 943155576 943156771 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g02944 K00016 - gmx:100814897 584.719
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g02944 4 943155576 943156771 Vifa4g02944 4 943155576 943156771 ECH
Vifa1g07738 1 1204952082 1204953353 Vifa4g02944 4 943155576 943156771 PCT