Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g07738 ATGCATAAAAGCATATCAGGTTCATCCTTGGGGCCAGATGGGTTGGACCTAACTCAATCATTCTTCAAGTCCATCTTAAACGCCGCGCCACCATCTCCAACCAAACGCCACAACAAAATCTCAGTTATCGGCGCAGGCAACGTGGGAATGGCTATAGCCCAAACCATTCTCACACAAGACCTCGTTGACGAACTTGTCCTTGTTGATGCAATTCCCGACAAGCTACGAGGTGAGATGCTTGATCTACAACATGCGGCGGCTTTTCTCCCCCGCACTAAGATCCAAGCCTCCACTGACTACTCAGTGACGATGGGGTCTGACCTCTGCATCGTCACTGCTGGGGCTCGTCAGATTAATGACGAGTCCAGATTGAATTTACTACATAGAAATGTTAATTTGTTTAAGAAAATTATTCCACCTTTGGCTCGTTACTCTCCTCATTGTGTTCTTCTAATTGTTTCTAATCCTGTTGATGTGCTCACTTACATTGCTTGGAAACTCTCTGGTTTCCCCTCGAACCGTGTCATTGGTTCGGGCACTAACTTGGATTCCTCTCGCTTCCGCTTCCTCATTGCTGATCATCTTGATGTTAATGCTCAAGATGTACAGGCATACATAGTGGGGGAACATGGTGACAGTTCAGTGGCACTATGGTCCAGCATTAGTGTTGGAGGTGTTCCAGTTCTAAGCTTTTTGGAGAAACAACAAATAGCATATGAGAAAGAAATGCTAGAGAACATACACAAGGAGGTTATAAACGGTGCGTACGAAGTCATCAGTTTAAAAGGGTACACTTCTTGGGCGATAGGGTACTCGGTCGCAAACTTGGCTCGAACAATAATGAGGAATCAAAGGAAGATTCATCCCGTTTCTGTTCTTGCAAAGGGATTTTATGGGATTGATGGTGGAGAAGTGTTTATTAGTTTGCCAGCACAGCTTGGTAGAGGAGGAGTATTGGGTGTGACCAATATTCATATGACTGAAGAGGAGATGAAGAGGCTTAAGGACTCTGCTACCACTATTCTTGAACTGCAGAATCAGTTGGGTATTTGA 1053 0.4482 MHKSISGSSLGPDGLDLTQSFFKSILNAAPPSPTKRHNKISVIGAGNVGMAIAQTILTQDLVDELVLVDAIPDKLRGEMLDLQHAAAFLPRTKIQASTDYSVTMGSDLCIVTAGARQINDESRLNLLHRNVNLFKKIIPPLARYSPHCVLLIVSNPVDVLTYIAWKLSGFPSNRVIGSGTNLDSSRFRFLIADHLDVNAQDVQAYIVGEHGDSSVALWSSISVGGVPVLSFLEKQQIAYEKEMLENIHKEVINGAYEVISLKGYTSWAIGYSVANLARTIMRNQRKIHPVSVLAKGFYGIDGGEVFISLPAQLGRGGVLGVTNIHMTEEEMKRLKDSATTILELQNQLGI 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g07738 350 PIRSF Lac_mal_DH 34 350 IPR001557 GO:0016616|GO:0019752
Vifa1g07738 350 CDD LDH_1 35 347 - -
Vifa1g07738 350 Gene3D - 20 179 - -
Vifa1g07738 350 FunFam Malate dehydrogenase 34 179 - -
Vifa1g07738 350 ProSitePatterns L-lactate dehydrogenase active site. 207 213 IPR018177 GO:0004459
Vifa1g07738 350 Pfam lactate/malate dehydrogenase, alpha/beta C-terminal domain 180 342 IPR022383 GO:0016616
Vifa1g07738 350 Pfam lactate/malate dehydrogenase, NAD binding domain 39 177 IPR001236 GO:0016491
Vifa1g07738 350 SUPERFAMILY LDH C-terminal domain-like 178 347 IPR015955 GO:0003824|GO:0016616
Vifa1g07738 350 Hamap L-lactate dehydrogenase [ldh]. 37 349 IPR011304 GO:0004459|GO:0005737
Vifa1g07738 350 Gene3D - 180 348 IPR015955 GO:0003824|GO:0016616
Vifa1g07738 350 NCBIfam L-lactate dehydrogenase 42 341 IPR011304 GO:0004459|GO:0005737
Vifa1g07738 350 PANTHER L-2-HYDROXYCARBOXYLATE DEHYDROGENASE (NAD(P)(+)) 18 348 - -
Vifa1g07738 350 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 24 177 IPR036291 -
Vifa1g07738 350 PRINTS L-lactate dehydrogenase signature 64 88 IPR001557 GO:0016616|GO:0019752
Vifa1g07738 350 PRINTS L-lactate dehydrogenase signature 205 218 IPR001557 GO:0016616|GO:0019752
Vifa1g07738 350 PRINTS L-lactate dehydrogenase signature 151 171 IPR001557 GO:0016616|GO:0019752
Vifa1g07738 350 PRINTS L-lactate dehydrogenase signature 175 193 IPR001557 GO:0016616|GO:0019752
Vifa1g07738 350 PRINTS L-lactate dehydrogenase signature 39 63 IPR001557 GO:0016616|GO:0019752
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g07738 Vifa-Chr1 1204952082 1204953353 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g07738 K00016 - gmx:100818856 621.698
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g07738 1 1204952082 1204953353 Vifa1g07738 1 1204952082 1204953353 ECH
Vifa1g07738 1 1204952082 1204953353 Vifa4g02944 4 943155576 943156771 PCT