Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g02941 ATGGCAAAGAGTTACTTCAAACAAGAGCATGATCTTGAGAAGAGAAGTGCTGAGGCTGCTAGGATTAGGGAGAAATACCCGGACCGAATTCCGGTGATTGTGGAGAAGGCAGAAAGAAGTGATATCCCAAGTATTGACAAGAAGAAGTACCTTGTCCCTGCTGATCTCACAGTTGGACAGTTTGTCTATGTTATCCGTAAAAGAATTAAACTAAGTGCAGAAAAGGCAATTTTTATTTTTGTGGACAATGTCCTTCCACCTACAGGAGCAATAATGTCAGCCATATATGATGAGAAGAAGGATGAAGATGGTTTTCTTTATGTTACTTACAGTGGGGAGAACACCTTTGGGGATATGATTTACCAGTAG 369 0.4065 MAKSYFKQEHDLEKRSAEAARIREKYPDRIPVIVEKAERSDIPSIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYDEKKDEDGFLYVTYSGENTFGDMIYQ 122
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g02941 122 CDD Ubl_ATG8 12 114 - -
Vifa4g02941 122 PANTHER MICROTUBULE-ASSOCIATED PROTEINS 1A/1B LIGHT CHAIN 3-RELATED 3 117 IPR004241 -
Vifa4g02941 122 Gene3D - 1 117 - -
Vifa4g02941 122 SUPERFAMILY Ubiquitin-like 3 117 IPR029071 -
Vifa4g02941 122 Pfam Autophagy protein Atg8 ubiquitin like 14 117 IPR004241 -
Vifa4g02941 122 FunFam Autophagy-related protein 1 117 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g02941 Vifa-Chr4 943084056 943086061 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g02941 K08341 - gmx:100781703 234.572
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g02941 4 943084056 943086061 Vifa4g02941 4 943084056 943086061 ECH
Vifa1g07735 1 1203877883 1203880871 Vifa4g02941 4 943084056 943086061 PCT