Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g07735 ATGATGTCCACTGGTGACCTTCTCAATATCGAACCCGTCGAACTCAAGTTCATCTTTGAGCTCAAGAAACAGATCTCGTGTTCTCTTATATTATCAAATAAGACCGATAGCTATGTAGCTTTCAAGGTGAAAACAACGAATCCGAAGAAATATTGTGTTCGGCCAAACACTGGAATTGTGTTGCCTCAATCTACTTGTGATGTTATAGTTACCATGCAAGCGCAAAAGGAAGCTCCAGCTGATATGCAATGCAAGGATAAGTTTCTTCTTCAAAGTGTGAGAGTAACTGATGGAGCCAATGCAAAGGAGATTACTCCTGAAATGTTCAACAAGGAAGCGGGGCATGTGGTTGAAGAGTGCAAATTGAGAGTGGTGTATGTTGCTCCACCTCAACCTCCGTCTCCAGTTCAAGAAGGTTCTGAGGAAGGATCATCACCTAGAGTTTCTTTTAACGAAAACGTAAATACAAATGGTGCTGACTCCACAACGATGATGAGAGCATTTACTGAACGACACGAGTATCCTGAAAAATCTGCAGAGGCAAAAGCTCTCATGTCAAGGCTGACTGAAGAAAAGAATAATGCAATTCAACTAAATAACAAGCTTCGTCAGGAACTGGACCTGCTGAAACGTCAAAGCAACAAAAGTCGTGGGAGTGCCTCGATGATCTTTGTCATATTTTTTGGTGTACTTGGCATGATTACAGGGTATCTCCTGAAGAAGACCTAA 729 0.4184 MMSTGDLLNIEPVELKFIFELKKQISCSLILSNKTDSYVAFKVKTTNPKKYCVRPNTGIVLPQSTCDVIVTMQAQKEAPADMQCKDKFLLQSVRVTDGANAKEITPEMFNKEAGHVVEECKLRVVYVAPPQPPSPVQEGSEEGSSPRVSFNENVNTNGADSTTMMRAFTERHEYPEKSAEAKALMSRLTEEKNNAIQLNNKLRQELDLLKRQSNKSRGSASMIFVIFFGVLGMITGYLLKKT 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g07735 242 PANTHER VESICLE-ASSOCIATED MEMBRANE PROTEIN-ASSOCIATED PROTEIN 5 238 IPR016763 GO:0005789
Vifa1g07735 242 PIRSF VAMP_assoc_prot 1 241 IPR016763 GO:0005789
Vifa1g07735 242 MobiDBLite consensus disorder prediction 130 156 - -
Vifa1g07735 242 Coils Coil 181 215 - -
Vifa1g07735 242 MobiDBLite consensus disorder prediction 137 156 - -
Vifa1g07735 242 ProSiteProfiles Major sperm protein (MSP) domain profile. 7 127 IPR000535 -
Vifa1g07735 242 Gene3D Immunoglobulins 2 131 IPR013783 -
Vifa1g07735 242 FunFam Vesicle-associated protein 1-1 2 130 - -
Vifa1g07735 242 Pfam MSP (Major sperm protein) domain 8 112 IPR000535 -
Vifa1g07735 242 SUPERFAMILY PapD-like 2 142 IPR008962 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g07735 Vifa-Chr1 1203877883 1203880871 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g07735 - - gmx:100798247 393.275
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g07735 1 1203877883 1203880871 Vifa1g07735 1 1203877883 1203880871 ECH
Vifa1g07735 1 1203877883 1203880871 Vifa4g02941 4 943084056 943086061 PCT