Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g02833 ATGGGCTGTTTCAACTCTAAGCCGACAACACAGTTTCCTGTCAAGGAGGATCCTGTGATTCTTGCATCACAGACTGCTTTCACTGTCAGCGAGGTCGAAGCATTATTCGAGCTTTTTAAGAGCATCAGCAGTTCTGTTGTTGATGATGGACTAATAAGCAAGGAAGAATTTCAATTGGCAATCTTCAAGAATAAGAAAAAAGAAAATATTTTTGCAAATCGGATCTTTGATCTATTCGATGTGAAGAAGAAGGGAGTTATTGATTTTGACGACTTTGTTAGATCTCTCAATGTCTTCCACCCAAATGCAGCAATAGAAGACAAGATAGAATTCTCATTTAGGCTCTATGATTTGCACAATACTGGTTTTATAGAGCGTCAAGCGGTCAAGCAAATGTTGATTGCACTTCTTTTCGAATCTGAAATGAAGTTGGCTGATGACGTGATAGAAACAATTCTTGACAAGACTTTCATGGACGCTGACCTGAACCAAGATGGCAAAATAGACATGGTCGAGTGGCGGAAATTTGTTTCTGAAAATCCATCACTGCTAAAAATCATGACACTGCCCTATCTAAGGGACATAACAACTTCTTTTCCGAGTTTTGTATTTAATTCTAACGTGGATGAGATTGTTGCTTGA 642 0.3863 MGCFNSKPTTQFPVKEDPVILASQTAFTVSEVEALFELFKSISSSVVDDGLISKEEFQLAIFKNKKKENIFANRIFDLFDVKKKGVIDFDDFVRSLNVFHPNAAIEDKIEFSFRLYDLHNTGFIERQAVKQMLIALLFESEMKLADDVIETILDKTFMDADLNQDGKIDMVEWRKFVSENPSLLKIMTLPYLRDITTSFPSFVFNSNVDEIVA 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g02833 213 Gene3D - 18 211 - -
Vifa4g02833 213 ProSiteProfiles EF-hand calcium-binding domain profile. 67 102 IPR002048 GO:0005509
Vifa4g02833 213 PANTHER CALCINEURIN B 2 210 IPR045198 GO:0005509|GO:0019722|GO:0019900
Vifa4g02833 213 Pfam EF-hand domain pair 107 177 IPR002048 GO:0005509
Vifa4g02833 213 ProSiteProfiles EF-hand calcium-binding domain profile. 148 183 IPR002048 GO:0005509
Vifa4g02833 213 ProSitePatterns EF-hand calcium-binding domain. 161 173 IPR018247 -
Vifa4g02833 213 SMART efh_1 71 99 IPR002048 GO:0005509
Vifa4g02833 213 SMART efh_1 152 180 IPR002048 GO:0005509
Vifa4g02833 213 SMART efh_1 108 136 IPR002048 GO:0005509
Vifa4g02833 213 ProSiteProfiles EF-hand calcium-binding domain profile. 104 139 IPR002048 GO:0005509
Vifa4g02833 213 SUPERFAMILY EF-hand 21 202 IPR011992 -
Vifa4g02833 213 FunFam calcineurin B-like protein 3 17 210 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g02833 Vifa-Chr4 906056392 906059099 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g02833 1 213 EF-hand Containing Proteins AT4G17615 78.873 1.04e-122 344
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g02833 K06268 - gmx:100527380 363.614
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g07643 1 1186742573 1186746022 Vifa4g02833 4 906056392 906059099 PCT