Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g07643 ATGGGTTGTGTATCCTCTAAAGTAACATATATAGGACATGAAGATCCATTCATTCTTGCATCAGAAACTACTTTTAGTGTAAGTGAAGTTGAAGCGCTATTTGAACTTTTTAAGAGCATAAGTAGGTCTGTCATTGATGATGGATTAATAAGCAAGGAAGAATTTCAATTGGCAATTTTTAATAATAGAGTAAAGGAAAATCTCTTTGCTAATCGGATTTTTGATCTATTTGATGTTAAAGGAAAAGGAGTAATTGACTTTGGTGATTTTGTGAGAGCACTCGATGTGTTTCATCCAAATGCATCACAAGATGTCAAGATAGATTTTTCATTCAGACTTTATGATTTGGACAATTCAGGCTTTATAGAGCGTCATGAAGTCAAAGAAATGATAAATGCAATTTTATGTGAATCGGAAATTAAGTTGAGTGATGATATGGTAGAAACAATTATTGAGAAGACTTTCTTGGATGCTGACCCAAACCAAGATGGAAAAATAGACAAATCCGAGTGGAAAATCTTTGTTTCTAAAAACTTGTCATTGCTAAAAATCATGACACTACCCAATCTAAGGGATATAACAACAAGTTTTCCAAGTTTTGTATTTAACTCAAAGTTGGATGATGACATTGTTACTTGA 639 0.3239 MGCVSSKVTYIGHEDPFILASETTFSVSEVEALFELFKSISRSVIDDGLISKEEFQLAIFNNRVKENLFANRIFDLFDVKGKGVIDFGDFVRALDVFHPNASQDVKIDFSFRLYDLDNSGFIERHEVKEMINAILCESEIKLSDDMVETIIEKTFLDADPNQDGKIDKSEWKIFVSKNLSLLKIMTLPNLRDITTSFPSFVFNSKLDDDIVT 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g07643 212 ProSitePatterns EF-hand calcium-binding domain. 115 127 IPR018247 -
Vifa1g07643 212 ProSiteProfiles EF-hand calcium-binding domain profile. 65 100 IPR002048 GO:0005509
Vifa1g07643 212 Pfam EF-hand domain pair 106 171 IPR002048 GO:0005509
Vifa1g07643 212 ProSiteProfiles EF-hand calcium-binding domain profile. 102 137 IPR002048 GO:0005509
Vifa1g07643 212 ProSitePatterns EF-hand calcium-binding domain. 159 171 IPR018247 -
Vifa1g07643 212 ProSiteProfiles EF-hand calcium-binding domain profile. 146 181 IPR002048 GO:0005509
Vifa1g07643 212 Gene3D - 16 209 - -
Vifa1g07643 212 SUPERFAMILY EF-hand 19 196 IPR011992 -
Vifa1g07643 212 PRINTS Recoverin family signature 73 94 - -
Vifa1g07643 212 PRINTS Recoverin family signature 120 138 - -
Vifa1g07643 212 PANTHER CALCINEURIN B 2 208 IPR045198 GO:0005509|GO:0019722|GO:0019900
Vifa1g07643 212 SMART efh_1 150 178 IPR002048 GO:0005509
Vifa1g07643 212 SMART efh_1 106 134 IPR002048 GO:0005509
Vifa1g07643 212 SMART efh_1 69 97 IPR002048 GO:0005509
Vifa1g07643 212 CDD EFh 106 171 IPR002048 GO:0005509
Vifa1g07643 212 FunFam calcineurin B-like protein 3 15 208 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g07643 Vifa-Chr1 1186742573 1186746022 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g07643 1 208 EF-hand Containing Proteins AT4G17615 72.381 2.94e-108 308
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g07643 K06268 - rcu:8276057 325.479
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g07643 1 1186742573 1186746022 Vifa1g07643 1 1186742573 1186746022 ECH
Vifa1g07643 1 1186742573 1186746022 Vifa4g02833 4 906056392 906059099 PCT