Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g02825 ATGTACAAAGAACGAGGCTTTTCTGCCTCCAAATCGGAGGATCGGAAACGAATCAACGATGTTCTCGACAAGCAGCTCGAACGTTCCTCTCCTTCTACTTCTCGTCCCATCAATGGCAAAAACAACAAAGACAGAGACAACAACAATAATACCATCAAGGATCCTCGTTCTGCTTCCGTCTCCAAAACTTCCAATATCTCTGAGGAATCTGAAACTGACAGTGAAGAGTCGGATGTTAGTGGTTCTGATGGGGATGACACATCTTGGATCTCATGGTTCTGCAATCTCAGAGGGAATGAGTTCTTTTGTGAGGTTGATGATGATTACATCCAGGATGACTTCAACCTTTGTGGGTTAAGCAGTCAAGTGCCTTACTATGATTACGCTCTTGATTTGATTTTGGATGTTGAATCCTCCCATGGTGATATGTTCACAGAGGAACAAAATGAGTTAATTGAATCGGCAGCAGAGATGCTTTATGGTATGATTCATGCACGATACGTACTGACAAGCAAAGGAATGGCTGCAATGCTTGACAAGTACAAAAACTATGACTTTGGTAGATGCCCAAGAGTTTACTGTTCTGGACAACCCTGCCTTCCAGTTGGTCAGTCAGACATTCCGAGGTCAAGTACCGTGAAAATATATTGTCCTAGGTGTGAAGATCTTTATTATCCTCGGTCCAAGTATCAAGGCAACATTGATGGAGCTTATTTTGGAACAACATTTCCACACCTTTTCTTGATGACTTATGGACAACTGAAGCCACAGAAGCCAGCTCAGGGCTATGTTCCAAGAGTTTTTGGGTTCAAACTTCACAAGCCATAA 828 0.4263 MYKERGFSASKSEDRKRINDVLDKQLERSSPSTSRPINGKNNKDRDNNNNTIKDPRSASVSKTSNISEESETDSEESDVSGSDGDDTSWISWFCNLRGNEFFCEVDDDYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQNELIESAAEMLYGMIHARYVLTSKGMAAMLDKYKNYDFGRCPRVYCSGQPCLPVGQSDIPRSSTVKIYCPRCEDLYYPRSKYQGNIDGAYFGTTFPHLFLMTYGQLKPQKPAQGYVPRVFGFKLHKP 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g02825 275 SMART CK_II_beta_2 88 271 IPR000704 GO:0005956|GO:0019887
Vifa4g02825 275 MobiDBLite consensus disorder prediction 1 84 - -
Vifa4g02825 275 PANTHER CASEIN KINASE II SUBUNIT BETA 67 274 IPR000704 GO:0005956|GO:0019887
Vifa4g02825 275 FunFam Casein kinase II subunit beta 186 260 - -
Vifa4g02825 275 MobiDBLite consensus disorder prediction 52 67 - -
Vifa4g02825 275 MobiDBLite consensus disorder prediction 1 24 - -
Vifa4g02825 275 Pfam Casein kinase II regulatory subunit 88 271 IPR000704 GO:0005956|GO:0019887
Vifa4g02825 275 ProSitePatterns Casein kinase II regulatory subunit signature. 189 220 IPR000704 GO:0005956|GO:0019887
Vifa4g02825 275 Gene3D - 186 260 - -
Vifa4g02825 275 Gene3D protein kinase ck2 holoenzyme, chain C, domain 1 81 185 IPR016149 GO:0005956|GO:0019887
Vifa4g02825 275 SUPERFAMILY Casein kinase II beta subunit 86 274 IPR035991 GO:0005956|GO:0019887
Vifa4g02825 275 PRINTS Casein kinase II regulatory subunit family signature 185 206 IPR000704 GO:0005956|GO:0019887
Vifa4g02825 275 PRINTS Casein kinase II regulatory subunit family signature 88 104 IPR000704 GO:0005956|GO:0019887
Vifa4g02825 275 PRINTS Casein kinase II regulatory subunit family signature 105 119 IPR000704 GO:0005956|GO:0019887
Vifa4g02825 275 PRINTS Casein kinase II regulatory subunit family signature 160 181 IPR000704 GO:0005956|GO:0019887
Vifa4g02825 275 PRINTS Casein kinase II regulatory subunit family signature 207 228 IPR000704 GO:0005956|GO:0019887
Vifa4g02825 275 PRINTS Casein kinase II regulatory subunit family signature 235 252 IPR000704 GO:0005956|GO:0019887
Vifa4g02825 275 FunFam Casein kinase II subunit beta 81 185 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g02825 Vifa-Chr4 904469062 904472635 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g02825 K03115 - gmx:100780095 469.544
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g02825 4 904469062 904472635 Vifa4g02825 4 904469062 904472635 ECH
Vifa1g07642 1 1186508817 1186511185 Vifa4g02825 4 904469062 904472635 PCT