Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g07642 ATGTACAGAGAGCGAGGAGGCGTTGGATCCAAAGCGGAGGTTGCTTCCGTTGATCGGAAGCGAATCAACGACGTCCTCGATAAACAACTCGAACGATCCTCGCCGTCCACTTCCAGAACCATCAACGGTAAAGATAGGTCCCCCTCTTCCTCTCTCTTAACCGCTAAGGATCATAGGGACCCTCGCTCTGGTTCCGCCGCGATTCCGAAAAATCCTAACGCTTCCGATGATGCATTGGCTGCAGAGGAATCTGAAACGGATAGTGAAGAGTCTGATGTTAGTGGTTCCGACGGGGACGACACGTCTTGGATCTCATGGTTTTGCAATTTGAGAGGAAATGAATTCTTTTGTGAGGTTGACGATGATTACATCCAAGACGATTTCAATCTGTGTGGTTTGAGCAGTCAAGTGCCTTATTATGATTATGCTCTTGATTTAATTTTGGATGTTGAGTCCTCCCATGGTGACATGTTTACCGAGGAACAAAATGAGTTAATTGAATCAGCAGCAGAGATGCTTTATGGTATGATTCATGCCCGGTATATATTGACCAGCAAAGGAATGGCTGCCATGCTGGATAAGTACAAGAACTATGACTTTGGCAGATGCCCAAGAGTTTACTGCTCTGGACAACCTTGCCTTCCAGTTGGTCAGTCCGACATTCCTAGGTCTAGCACTGTGAAGATATATTGCCCGAGATGTGAAGACATTTACTATCCTCGGTCCAAGTATCAAGGCAACATTGATGGAGCTTATTTTGGTACTACGTTTCCCCACCTGTTCCTGATGACTTACGGACAACTGAAGCCACAGAAACCATCACAGAACTATGTTCCGAGAGTTTTTGGATTCAAACTTCACAAACCATGA 870 0.4563 MYRERGGVGSKAEVASVDRKRINDVLDKQLERSSPSTSRTINGKDRSPSSSLLTAKDHRDPRSGSAAIPKNPNASDDALAAEESETDSEESDVSGSDGDDTSWISWFCNLRGNEFFCEVDDDYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQNELIESAAEMLYGMIHARYILTSKGMAAMLDKYKNYDFGRCPRVYCSGQPCLPVGQSDIPRSSTVKIYCPRCEDIYYPRSKYQGNIDGAYFGTTFPHLFLMTYGQLKPQKPSQNYVPRVFGFKLHKP 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g07642 289 Gene3D protein kinase ck2 holoenzyme, chain C, domain 1 95 199 IPR016149 GO:0005956|GO:0019887
Vifa1g07642 289 MobiDBLite consensus disorder prediction 29 50 - -
Vifa1g07642 289 Pfam Casein kinase II regulatory subunit 102 285 IPR000704 GO:0005956|GO:0019887
Vifa1g07642 289 MobiDBLite consensus disorder prediction 1 98 - -
Vifa1g07642 289 MobiDBLite consensus disorder prediction 14 28 - -
Vifa1g07642 289 FunFam Casein kinase II subunit beta 95 199 - -
Vifa1g07642 289 Gene3D - 200 274 - -
Vifa1g07642 289 PANTHER CASEIN KINASE II SUBUNIT BETA 81 288 IPR000704 GO:0005956|GO:0019887
Vifa1g07642 289 SMART CK_II_beta_2 102 285 IPR000704 GO:0005956|GO:0019887
Vifa1g07642 289 SUPERFAMILY Casein kinase II beta subunit 100 288 IPR035991 GO:0005956|GO:0019887
Vifa1g07642 289 PRINTS Casein kinase II regulatory subunit family signature 249 266 IPR000704 GO:0005956|GO:0019887
Vifa1g07642 289 PRINTS Casein kinase II regulatory subunit family signature 119 133 IPR000704 GO:0005956|GO:0019887
Vifa1g07642 289 PRINTS Casein kinase II regulatory subunit family signature 102 118 IPR000704 GO:0005956|GO:0019887
Vifa1g07642 289 PRINTS Casein kinase II regulatory subunit family signature 199 220 IPR000704 GO:0005956|GO:0019887
Vifa1g07642 289 PRINTS Casein kinase II regulatory subunit family signature 174 195 IPR000704 GO:0005956|GO:0019887
Vifa1g07642 289 PRINTS Casein kinase II regulatory subunit family signature 221 242 IPR000704 GO:0005956|GO:0019887
Vifa1g07642 289 MobiDBLite consensus disorder prediction 80 96 - -
Vifa1g07642 289 ProSitePatterns Casein kinase II regulatory subunit signature. 203 234 IPR000704 GO:0005956|GO:0019887
Vifa1g07642 289 FunFam Casein kinase II subunit beta 200 274 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g07642 Vifa-Chr1 1186508817 1186511185 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g07642 K03115 - gmx:100799304 505.753
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g07642 1 1186508817 1186511185 Vifa1g07642 1 1186508817 1186511185 ECH
Vifa1g07642 1 1186508817 1186511185 Vifa4g02825 4 904469062 904472635 PCT