Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g02800 ATGAAAACAAGAAAAGGAAAACGCTCAGAGGTGTTTTGGCCCTCCACAGTCATGAAGAAATGGTTGAATATAAAGCAAAAAGTGTATGATTTTAGCGAAGATGAAGCGGATACTGAAACCGAAAGCGATGATGATGATACATCTTGCAAAGACTACAAGACGAGGCGACACAAAAGAGGAAAATCAGAAACTTTGCGCGTTCAGTACATAAATACAAAGGAAGTGAGAGTAACAATTGGTACTTGGAATGTTGCTGGAGTACCTCCATGTAATGATCTTGATATTGAAGACTGGCTTTGTACTAAAAAACCAGCAGATATTTACATTATTGGTTTTCAAGAGGTGGTTCCATTGAATGCTGGGAATGTGCTAGGAGCTGAAGATAATAAACCTATTTCGAAATGGGAAGAAATCATTAGAAGGACTCTAAACAAATCATCTGAACATGAAACCAAACAGAAAAGCTATAGTGCACCATCTTCTCCTGTTAGAACAAATTCTTCACTTGATACACAAATGAATCAACTAGCTATGGTGGATGAGGGAGAGAAAACCATAATTGGTATAGAAAAGAATCTTCAATTGAGAAAAATATATGACATTGATCTTCAAACTATACTTGATTGGCCTGAAAGTCCATTAGATGAAACTCGTAACTTTGATTCGACTCCAAAGTTGCGTAGAGTACTAAGCAGTTCAGCTAAAATTGGATTTAATTTGATGGATAGTGCTTCAATGTATGGTTATGGAAAGAAAAGTTTATACCGAAGTTCTGGAAATTTGAGTTTGTTATGGAGAGAAAAACAACAAGAAACGGTTCCTCGAGTAGTTGATGTATCTGATATGTCATCTGATGAAGAAAATGACAGTTTCGACGAACTACAAGATAAAAAAGATGTTAGTGAGAAATCACATCCTAAGTATGTTAGGATCGTGAGTAAGCAGATGGTGGGAATATATGTGTCTGTTTGGGTACAAAGGAAGCTGAGAAGGCATATTCATCATTTGAAAGTTTCTCCTGTTGGAGTTGGTCTTATGGGCTATATGGGAAACAAGGGGTCTGTTTCGGTTAGTATGTCTGTTTTTCAGTCGCGTATGTGCTTTGTCTGTTCCCATCTTGCTTCTGGTCAAAAAGATGGAGCGGAACAAAGACGAAACTCAGATGTTAATGAAATTCTACAACGCACTCGTTTCTCTTCAGTCTTCGACTCAGATCAACCACGCACGATTCCATCGCACGATCAAATTTTCTGGTTTGGAGATTTGAATTACCGTATCAATATGTCGGATGGCGAGGTTCGGAAGCTAGTAGCTCTAAAAAATTGGGATGAACTCATGAATTATGACCAGCTAAGCAATGAATTATGTAATGGACATGTATTTGAGGGATGGAAAGAAGGGTTGGTAAATTTTCCACCTACTTACAAATATGAATTCAACTCCGATAAATATGCGGGCAAGTTCACACAAGAAGGCGAAAAAAAGAGATCTCCAGCATGGTGTGATCGCATATTGTGGATAGGAAAAGGAATAAAGCAACTTGAGTATCAATGTGCAGCAAATAAGCTCTCAGATCATCGACCAGTTAGTTCAATCTTCTTGGTTGATGTTGAAGTAATTGACCGGCGAAAACTACAACGAGCTCTAAATTTCACAAGTGCAGTTGTACATCCAGAGATTTTCGTTAAAGAGGATGATGAAGACATGTTCTAG 1713 0.3795 MKTRKGKRSEVFWPSTVMKKWLNIKQKVYDFSEDEADTETESDDDDTSCKDYKTRRHKRGKSETLRVQYINTKEVRVTIGTWNVAGVPPCNDLDIEDWLCTKKPADIYIIGFQEVVPLNAGNVLGAEDNKPISKWEEIIRRTLNKSSEHETKQKSYSAPSSPVRTNSSLDTQMNQLAMVDEGEKTIIGIEKNLQLRKIYDIDLQTILDWPESPLDETRNFDSTPKLRRVLSSSAKIGFNLMDSASMYGYGKKSLYRSSGNLSLLWREKQQETVPRVVDVSDMSSDEENDSFDELQDKKDVSEKSHPKYVRIVSKQMVGIYVSVWVQRKLRRHIHHLKVSPVGVGLMGYMGNKGSVSVSMSVFQSRMCFVCSHLASGQKDGAEQRRNSDVNEILQRTRFSSVFDSDQPRTIPSHDQIFWFGDLNYRINMSDGEVRKLVALKNWDELMNYDQLSNELCNGHVFEGWKEGLVNFPPTYKYEFNSDKYAGKFTQEGEKKRSPAWCDRILWIGKGIKQLEYQCAANKLSDHRPVSSIFLVDVEVIDRRKLQRALNFTSAVVHPEIFVKEDDEDMF 570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g02800 570 SUPERFAMILY DNase I-like 67 555 IPR036691 -
Vifa4g02800 570 Gene3D Endonuclease/exonuclease/phosphatase 255 560 IPR036691 -
Vifa4g02800 570 MobiDBLite consensus disorder prediction 153 167 - -
Vifa4g02800 570 FunFam Type I inositol polyphosphate 5-phosphatase 2 252 559 - -
Vifa4g02800 570 SMART i5p_5 238 541 IPR000300 GO:0016791|GO:0046856
Vifa4g02800 570 MobiDBLite consensus disorder prediction 279 299 - -
Vifa4g02800 570 MobiDBLite consensus disorder prediction 144 167 - -
Vifa4g02800 570 MobiDBLite consensus disorder prediction 33 55 - -
Vifa4g02800 570 Pfam Endonuclease/Exonuclease/phosphatase family 80 526 IPR005135 GO:0003824
Vifa4g02800 570 FunFam Type I inositol polyphosphate 5-phosphatase 2 55 167 - -
Vifa4g02800 570 Gene3D Endonuclease/exonuclease/phosphatase 55 164 IPR036691 -
Vifa4g02800 570 PANTHER TYPE IV INOSITOL POLYPHOSPHATE 5-PHOSPHATASE 9 17 554 IPR045849 GO:0004445
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g02800 Vifa-Chr4 887950914 887953733 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g02800 308 542 Acyl Lipid Metabolism Gene Families AT2G43900 31.408 6.53e-36 142
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g02800 K24221 - gmx:100794203 815.453
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g07566 1 1174690940 1174693817 Vifa4g02800 4 887950914 887953733 PCT