Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g07566 ATGAAGGGAAGAAGAGGAAAAAGATCAGAGGCTTTTTGGCCTTCTATTGTGATGAAAAAATGGCTTAATATTAAGCCTAAGGTGAATGATTTTAGTGAAGATGAAGTTGATACTGAAACTGAGAGTGAAGATGATGTTTTCTCTCCTAAACAATCGAAAATGGAAGTGCGAGGCGGTGGAGATAATCCATTTAGAACACAAGGGGTTCAATCTATATTCTCAAGTCAAATACCAGATGCATCTTTTAAGAAAGGATACAAAACAAAACACAGAAGAGGAAAATCGGAAACTTTGCGTGCTCAGTACATAAACACTAAGGAAGTGAAGGTAGCAATTGGATCTTGGAATGTTGCTGGAAAACATCCATCCAAGAATCTTGATATTGATGACTGGATTTGTGCCGAAGAACCGAGTGATATTTACATTTTCGGTTTTCAGGAAGTGGTTCCACTGAATGCTGGAAATGTACTTGGAGCCGAGGATAATACGCCGATCCAAAAATGGGAAGCAATCATCCGAAGATCTTTAAACAAATCTTCTGAGCCTGACAGTAAACATAAAAGTCATAGCGCGCCTCCTTCTCCGGTTTTGAGAACTTCTTCTGCCGCTGATGTTCTAGCCGAAACTATAGACGGTGATAATCCAATTGCCATGATGAATGATGAGTATATGGAAACTGTTGTTGAGAAATATGATCTGCAACAACAGTTGGAAGCGAATAACATAATTAGTATAGGAAATGATATACATGTGAGGAAAGTTTATGGTATTGATCTTGATTGGCCTGAACGTCCGTTAGACGCAATCTCACAAATTGTTGATTCGAATCCCAAGTTGCGGAGAGTACTAAGTAGTTCAGCTAGAATTGGCTTTGACTTGAATGAGAATGCTTTCATATACAGCGGCGCTGGTGCTGGTGCTGGTGCTGGTGGTGGATTGAAACGCTCGCACCATAGTTTGGGAAATTTGGGCTTGTTATTGAAAGAGCAACAAGTTATACCGGAAGTAGTTGATTCCTTAGATGATGTATCTGAGATGTTGTCTAATGAGGATGATGATGCTTTTATTGAATTACCTGAGAACCAAGATGATGATGGATTAGACGCGACAAAATCGCACGCGAGGTATGTTCGGATTATCAGCAAGCAGATGGTGGGAATATATGTATCTGTTTGGGTGCAAAGGAGGTTGAGAAGACACATTAATAATTTGAAGGTTTCTCCTGTTGGAGTTGGTCTTATGGGCTACATGGGAAACAAGGGTTCGGTTTCAATCAGCATGTCACTCTTTCAGTCACGTATGTGCTTTGTTTGTTCTCATCTGACTTCTGGTACGAACGATGGAGCCGAACAAAGACGAAACTCTGATGTTAATGAAATTCTACGACGCACTTGTTTCTCGTCCGTCTTTGATACAGATCAAGCACTAACAATACCATCACACGATCAGATTTTCTGGTTCGGAGATTTGAATTATCGGATCAGTATGTTAGACTCCGAAGTTCGAAAATTGGTGGCTCTAAAAAAGTGGGATGAACTAATGTATTATGATCAGCTAAGCAACGAACTGCGTGTCGGACGCGTATTTGAAGGATGGAAAGAAGGGTTGATAAATTTCGCACCTACTTACAAATATGAAATCAACTCTGATAGATATGTTGGTGAGATTCCAAAAGAAGGCGAGAAAAAAAGAGCTCCTGCATGGTGTGATCGTATATTATGGTTAGGAAAAGGAATAAAGCAACTACAATACGAACGTGCAGAAATTAAGCTCTCTGATCATAGACCAGTTAGTTCAATTTTCTCGGTTGAAGTTGAAGTATTCGATCATCGCAAACTAAGAAGAGCGCTAAATTTCACTAGTACTGCAGCTGTTCATCCTGAGATTTTCCCTGATGAAGAAGATGGTCAATTTTACTAG 1920 0.3984 MKGRRGKRSEAFWPSIVMKKWLNIKPKVNDFSEDEVDTETESEDDVFSPKQSKMEVRGGGDNPFRTQGVQSIFSSQIPDASFKKGYKTKHRRGKSETLRAQYINTKEVKVAIGSWNVAGKHPSKNLDIDDWICAEEPSDIYIFGFQEVVPLNAGNVLGAEDNTPIQKWEAIIRRSLNKSSEPDSKHKSHSAPPSPVLRTSSAADVLAETIDGDNPIAMMNDEYMETVVEKYDLQQQLEANNIISIGNDIHVRKVYGIDLDWPERPLDAISQIVDSNPKLRRVLSSSARIGFDLNENAFIYSGAGAGAGAGGGLKRSHHSLGNLGLLLKEQQVIPEVVDSLDDVSEMLSNEDDDAFIELPENQDDDGLDATKSHARYVRIISKQMVGIYVSVWVQRRLRRHINNLKVSPVGVGLMGYMGNKGSVSISMSLFQSRMCFVCSHLTSGTNDGAEQRRNSDVNEILRRTCFSSVFDTDQALTIPSHDQIFWFGDLNYRISMLDSEVRKLVALKKWDELMYYDQLSNELRVGRVFEGWKEGLINFAPTYKYEINSDRYVGEIPKEGEKKRAPAWCDRILWLGKGIKQLQYERAEIKLSDHRPVSSIFSVEVEVFDHRKLRRALNFTSTAAVHPEIFPDEEDGQFY 639
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g07566 639 SMART i5p_5 311 609 IPR000300 GO:0016791|GO:0046856
Vifa1g07566 639 MobiDBLite consensus disorder prediction 32 61 - -
Vifa1g07566 639 Gene3D Endonuclease/exonuclease/phosphatase 338 628 IPR036691 -
Vifa1g07566 639 MobiDBLite consensus disorder prediction 177 199 - -
Vifa1g07566 639 Pfam Endonuclease/Exonuclease/phosphatase family 338 594 IPR005135 GO:0003824
Vifa1g07566 639 Gene3D Endonuclease/exonuclease/phosphatase 88 192 IPR036691 -
Vifa1g07566 639 FunFam Type I inositol polyphosphate 5-phosphatase 2 314 628 - -
Vifa1g07566 639 SUPERFAMILY DNase I-like 99 619 IPR036691 -
Vifa1g07566 639 FunFam Type I inositol polyphosphate 5-phosphatase 2 88 200 - -
Vifa1g07566 639 PANTHER TYPE IV INOSITOL POLYPHOSPHATE 5-PHOSPHATASE 9 17 625 IPR045849 GO:0004445
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g07566 Vifa-Chr1 1174690940 1174693817 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g07566 376 574 Acyl Lipid Metabolism Gene Families AT1G05630 35.398 3.55e-35 140
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g07566 K24221 - ccaj:109800886 946.036
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g07566 1 1174690940 1174693817 Vifa4g02800 4 887950914 887953733 PCT