Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g02650 ATGTCATCAATAATACAACACTCTTTGATCTTATTGTCCTTGATCACTTTGTCATTAGCATTGGACATTTCAAGTGAACGTAGTAACAAGGAGGTTATGAGGATGTACGAGAAATGGATAGTAAAACACCAAAAAGTGTATAACGATTTAGGAGAGAAAAACCAAAGATTTGAAATATTTAAGGATAATTTAAAATTCATTGATGAGCACAATGCTGAAAATCACACTTATAAAGTTGGATTGAACAAGTTTGCAGATATGAGTGATGAAGAATATCGTATGTATTTGGGCACAAAGACTAATAATATTAAAAATAAGATGAGCAGTGAACGATATGCTTATAAGGCAGATGATAATGACATATTGCCTGAGTCTGTTGATTGGAGATGGGCTGTTGGTAGTATCAAAGATCAAGGAAAATGCGGATCTTGTTGGGCGTTTTCCACAGTAGCAGCAGTGGAAGCGATTAACAAGATAGTAATAGGGAGTTTTAGGAATTTGTCTGTACAAGAGCTTGTGGATTGTGATAGAACAAAAAGTACAGGGTGCAAAGGTGGTTACGTAGACAAGGCCTTCGAATTCATTATTAAAAATGGTGGCCTTGACTCAGAGGAAGACTATCCATACCAAGAACGACAGGGCACATGTGATCAAGAAAAAAAAAATACCAAGGTATTGAGCATTGATGGATATGAGAAGGTTCCGAGATCTAATGAAAATGCATTAAAGAAAGCTGTGGCTCATCAACCTGTCACCGTTGCTATTGAGGCTTATGGAGGGGCTTTCAAACTCTATGAATCGGGTGTATTTACCGGTGATTGTGGGACAAAATTAGATCATGCTGTGTTGGTTGTTGGATATGGTTCTGAAAATGGTGTTGATTATTGGTTGGTGAGGAACTCATGGGGCACTAACTGGGGTGTAGATGGTTACTTCAAGATAGAGCGTAATTATAGATACTCAAGGGCAGGCAAGTGTGGCATCGCATTGTTCCCTTCTTTCCCAGTGAAACATGCTCAAAAATCTGCAATTACTAATACAGCTTATGAAAAAACTCAAGTGCTTGTTACCAGTGCTTGA 1080 0.3796 MSSIIQHSLILLSLITLSLALDISSERSNKEVMRMYEKWIVKHQKVYNDLGEKNQRFEIFKDNLKFIDEHNAENHTYKVGLNKFADMSDEEYRMYLGTKTNNIKNKMSSERYAYKADDNDILPESVDWRWAVGSIKDQGKCGSCWAFSTVAAVEAINKIVIGSFRNLSVQELVDCDRTKSTGCKGGYVDKAFEFIIKNGGLDSEEDYPYQERQGTCDQEKKNTKVLSIDGYEKVPRSNENALKKAVAHQPVTVAIEAYGGAFKLYESGVFTGDCGTKLDHAVLVVGYGSENGVDYWLVRNSWGTNWGVDGYFKIERNYRYSRAGKCGIALFPSFPVKHAQKSAITNTAYEKTQVLVTSA 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g02650 359 Pfam Papain family cysteine protease 122 335 IPR000668 GO:0006508|GO:0008234
Vifa4g02650 359 CDD Peptidase_C1A 123 335 IPR039417 -
Vifa4g02650 359 FunFam Cysteine protease 1 14 338 - -
Vifa4g02650 359 Gene3D Cysteine proteinases 18 338 - -
Vifa4g02650 359 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 295 314 IPR025661 -
Vifa4g02650 359 SUPERFAMILY Cysteine proteinases 29 336 IPR038765 -
Vifa4g02650 359 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 28 329 IPR013128 GO:0008234
Vifa4g02650 359 Pfam Cathepsin propeptide inhibitor domain (I29) 36 92 IPR013201 -
Vifa4g02650 359 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 278 288 IPR025660 -
Vifa4g02650 359 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 138 149 IPR000169 -
Vifa4g02650 359 SMART pept_c1 122 336 IPR000668 GO:0006508|GO:0008234
Vifa4g02650 359 PRINTS Papain cysteine protease (C1) family signature 138 153 IPR000668 GO:0006508|GO:0008234
Vifa4g02650 359 PRINTS Papain cysteine protease (C1) family signature 295 301 IPR000668 GO:0006508|GO:0008234
Vifa4g02650 359 PRINTS Papain cysteine protease (C1) family signature 280 290 IPR000668 GO:0006508|GO:0008234
Vifa4g02650 359 SMART Inhibitor_I29_2 36 92 IPR013201 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g02650 Vifa-Chr4 813452604 813453931 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g02650 K25900 K25899 tpra:123919804 488.419
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g03637 2 1059243285 1059246245 Vifa4g02650 4 813452604 813453931 ECH
Vifa4g02650 4 813452604 813453931 Vifa4g02650 4 813452604 813453931 ECH