Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g03637 ATGGGTCTTAATAGATCACCTATTACAGTGATCTTGGTCGTCTTCACGGTGTTCACTGTAATACTTGCCTCCGACATGTCTATCATCTCCTACGACGAAACCCACGCAGACAAGTCTTCCTGGAGAACTGAAGAGGAGGTGATGAGCCTATACGAGGAGTGGCGCGTGAGACATGGAAAGGTGAGTATCAACAACCTGGGAGAAAAGGATAAGAGATTTGAGATCTTCAAAGACAACCTTAGGTTCATCGACGAACACAATGCTGAGAACCGGACATATAAGGTTGGGTTGAACCGGTTCGCTGATCTTAGCAACCAAGAGTACCAGTCCATATATCTTGGAATTAGGACTGACTCAAATCGGTTGGAAAAGGCTGTGACGAAGAGCAACCGTTATGCTGCAAGTGTTGGTGATAACTTGCCTGAATCTGTTGATTGGAGGAAACAAGGTGCAGTGACCCAAGTCAAAGACCAAGGAAGTTGTGGTAGCTGCTGGGCCTTTTCAGCCATAGCTGCTGTGGAAGGGATTAACAAGATAGTAACAGACGAGCTTGTTTCACTATCAGAACAAGAACTGATTGATTGTGACAGAACAATTAACGCAGGATGCGATGGTGGCCTCATGGACTATGCCTTTGAGTTCATCATAAACAATGGTGGTATTGACACCGATAAGGATTATCCCTATCGTGCTGTTGATGGTAAATGTGATCAAAACAAGAAAAATGCTAGAGCTGTTACCATTGATGACTACGAACAGGTTCCTGCTAATGACGAGTTAGCCTTGAAAAAAGCTGTTGCAAATCAACCAATCAGTGTTGCCATTGAAGCAGGTGGTAGGGAATTCCAGTTATATGTATCGGGTATATTTACCGGAAGATGTGGGACATCATTAGACCATGGTGTTACTGCTGTTGGATATGGAACAGAAAATGGAGTTGATTATTGGATCGTAAAGAATTCATGGGGAAAGAGTTGGGGAGAAGCAGGTTACGTGAAAATGGAGCGTAATCTAGCGACCAGCGTGTCAGGAAAATGTGGAATTGCAATGCAGTCTTCCTATCCTATAAAGAAGGGCCAAAATCCTCCAAATCCTGGACCATCCCCTCCTTCACCTGTGAACCCTCCAACGGTTTGTAGTAGATCCTACCGTTGTGCTTCGGGCACTACTTGCTGTTGTACATTTGGATTTGGAAAACTATGCTTCTCATGGGGATGTTGTCCTCTTGAAGCTGCAGTCTGTTGTAAAGACCGATCAAGTTGTTGTCCTCATGACTATCCCGTTTGCAACACTCGCCAAGGAACCTGTCTTAGGAGTAAGGATAATCCATTTGGAGTGAAGGCAATGAAGAGAACTTTGGCTAAACCGCATGGGACGTTTGAAGATTAA 1389 0.4442 MGLNRSPITVILVVFTVFTVILASDMSIISYDETHADKSSWRTEEEVMSLYEEWRVRHGKVSINNLGEKDKRFEIFKDNLRFIDEHNAENRTYKVGLNRFADLSNQEYQSIYLGIRTDSNRLEKAVTKSNRYAASVGDNLPESVDWRKQGAVTQVKDQGSCGSCWAFSAIAAVEGINKIVTDELVSLSEQELIDCDRTINAGCDGGLMDYAFEFIINNGGIDTDKDYPYRAVDGKCDQNKKNARAVTIDDYEQVPANDELALKKAVANQPISVAIEAGGREFQLYVSGIFTGRCGTSLDHGVTAVGYGTENGVDYWIVKNSWGKSWGEAGYVKMERNLATSVSGKCGIAMQSSYPIKKGQNPPNPGPSPPSPVNPPTVCSRSYRCASGTTCCCTFGFGKLCFSWGCCPLEAAVCCKDRSSCCPHDYPVCNTRQGTCLRSKDNPFGVKAMKRTLAKPHGTFED 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g03637 462 FunFam Cysteine protease 1 376 439 - -
Vifa2g03637 462 Pfam Granulin 390 437 IPR000118 -
Vifa2g03637 462 FunFam Cysteine protease 1 27 358 - -
Vifa2g03637 462 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 315 334 IPR025661 -
Vifa2g03637 462 PRINTS Papain cysteine protease (C1) family signature 315 321 IPR000668 GO:0006508|GO:0008234
Vifa2g03637 462 PRINTS Papain cysteine protease (C1) family signature 300 310 IPR000668 GO:0006508|GO:0008234
Vifa2g03637 462 PRINTS Papain cysteine protease (C1) family signature 158 173 IPR000668 GO:0006508|GO:0008234
Vifa2g03637 462 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 158 169 IPR000169 -
Vifa2g03637 462 Pfam Cathepsin propeptide inhibitor domain (I29) 51 108 IPR013201 -
Vifa2g03637 462 SMART GRAN_2 379 436 IPR000118 -
Vifa2g03637 462 SUPERFAMILY Granulin repeat 376 410 - -
Vifa2g03637 462 Gene3D Granulin 377 445 IPR037277 -
Vifa2g03637 462 SMART pept_c1 140 356 IPR000668 GO:0006508|GO:0008234
Vifa2g03637 462 Pfam Papain family cysteine protease 140 356 IPR000668 GO:0006508|GO:0008234
Vifa2g03637 462 SUPERFAMILY Cysteine proteinases 42 356 IPR038765 -
Vifa2g03637 462 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 42 354 IPR013128 GO:0008234
Vifa2g03637 462 SMART Inhibitor_I29_2 51 108 IPR013201 -
Vifa2g03637 462 Gene3D Cysteine proteinases 23 358 - -
Vifa2g03637 462 CDD Peptidase_C1A 141 355 IPR039417 -
Vifa2g03637 462 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 298 308 IPR025660 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g03637 Vifa-Chr2 1059243285 1059246245 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g03637 K25900 - vvi:100241957 687.182
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g03637 2 1059243285 1059246245 Vifa4g02650 4 813452604 813453931 ECH
Vifa2g03637 2 1059243285 1059246245 Vifa2g03637 2 1059243285 1059246245 ECH