Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g02495 ATGAGTGCTGTGAATCTTAACACATGGACACACTCCAATTTCATGTTCAATCAAGTTACTGCTACCAGATTCAGATCCAGATCCACATCCACATCTTTCTATTTTACCAAAATACCCTCCACCATTAAACCCCAAACTCATACCCAATCCATGAACTCTTCTTCTTTTCATTTTTCCGTTTCAGCTTTGCTCACTAAACAAGAAACAATTGAAACCGAAGAGAAACCAGTTTTCGATTTCAAATCCTACATGATCGAAAAAGCAACTAGGGTTAACAAAGCCCTAGACGACGCCGTTTCGTTACGCGAACCATTAAAAGTTCACGACGCTATGCGATACTCTCTCCTCGCCGGCGGAAAGCGCGTCCGCCCCGTCCTATGCTTAGCCGCCTGCGATCTCGTCGGAGGAACCGAATCTATGTCGATGCCAGCCGCCTGCGCCGTCGAAATGATCCACACTATGTCGCTCATCCACGACGACCTTCCGTGTATGGATAACGACGATCTCCGACGAGGAAAACCGACGAATCACAAAGTCTACGGAGAAGACGTCGCGGTTCTCGCTGGAGACGCGTTACTCGCTTTCGCCTTCGAGCATATTGCAGTTTCTACATCCGGCGTTTCTCCGGCGAGAATCGTCCGCGCGATCGGAGAATTAGCGAAGTCAATCGGCTCAGAAGGACTCGTTGCCGGTCAAGTGGTTGATATAAACTCCGAAGGTTTATCTGATGTGGGAATAGAGAGGCTCGAGTTCATTCATCTTCATAAAACCGCGGCGTTGTTAGAAGGTGCGGTTGTTCTCGGTGCGATTCTCGGTGGCGGTTGCGATGAAGATGTTGAAAAACTGAGAAAATTTGCTAGGTATATAGGTTTATTGTTTCAGGTTGTTGATGATATTCTTGATGTGACGAAATCTTCGCAAGAATTAGGTAAAACGGCTGGGAAAGATTTGGTAGCTGATAAGGTTACTTATCCAAAGCTTATGGGGATTCAAAAATCTAAAGACTTTGCTGAGAAATTGAACAGGGATGCACAGGATCAGCTTTCTGGCTTTGATTCTAGGAAATCTGCTCCTTTGATTGCTTTGGCTAATTACATTGCTCATAGGCAAAACTAA 1116 0.4561 MSAVNLNTWTHSNFMFNQVTATRFRSRSTSTSFYFTKIPSTIKPQTHTQSMNSSSFHFSVSALLTKQETIETEEKPVFDFKSYMIEKATRVNKALDDAVSLREPLKVHDAMRYSLLAGGKRVRPVLCLAACDLVGGTESMSMPAACAVEMIHTMSLIHDDLPCMDNDDLRRGKPTNHKVYGEDVAVLAGDALLAFAFEHIAVSTSGVSPARIVRAIGELAKSIGSEGLVAGQVVDINSEGLSDVGIERLEFIHLHKTAALLEGAVVLGAILGGGCDEDVEKLRKFARYIGLLFQVVDDILDVTKSSQELGKTAGKDLVADKVTYPKLMGIQKSKDFAEKLNRDAQDQLSGFDSRKSAPLIALANYIAHRQN 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g02495 371 ProSitePatterns Polyprenyl synthases signature 1. 156 172 IPR033749 -
Vifa4g02495 371 FunFam Geranylgeranyl diphosphate synthase 77 371 - -
Vifa4g02495 371 Pfam Polyprenyl synthetase 108 339 IPR000092 GO:0008299
Vifa4g02495 371 SUPERFAMILY Terpenoid synthases 80 354 IPR008949 -
Vifa4g02495 371 ProSitePatterns Polyprenyl synthases signature 2. 289 301 IPR033749 -
Vifa4g02495 371 PANTHER FARNESYL DIPHOSPHATE SYNTHASE 3 371 - -
Vifa4g02495 371 CDD Trans_IPPS_HT 107 369 IPR000092 GO:0008299
Vifa4g02495 371 SFLD Polyprenyl Transferase Like 83 369 - -
Vifa4g02495 371 SFLD Isoprenoid Synthase Type I 83 369 - -
Vifa4g02495 371 Gene3D Farnesyl Diphosphate Synthase 77 371 IPR008949 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g02495 Vifa-Chr4 752492632 752493747 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g02495 K13789 - gmx:100785539 545.043
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g02495 4 752492632 752493747 Vifa4g02495 4 752492632 752493747 ECH
Vifa4g02495 4 752492632 752493747 Vifa1g06937 1 1070958908 1070960017 ECH
Vifa1g06937 1 1070958908 1070960017 Vifa4g02495 4 752492632 752493747 PCT