Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g06937 ATGAGTTCAATCATTGTTAATACATGGGTTACTCCCAATTCTTTGTTGAGGCAAACAATCACAACAAAAAACCAAACTCTCATTCCCTTTCTAGCTATTCCCATTTCCTCAATCACCAATCAACAAAGAAGAGGAAATTTGGTTACTTCTTTTTCATCTAGCAAAATCTATGGGGTTCAAACTAGTGCAGACAAAGAAATCGAAATCGAAGAAAAGGTATCGAATTTCGATTTCAATGTCTACATGCTAGAGAAAGCTAATATAGTCAACAAAGCATTGGATGAATCAATTGTACTTCAAGAACCGGTGAAGATTCATGAAGCAATGCGATACTCTCTCCTCGCAAGTGGAAAGCGTGTCCGTCCAATTCTCTGCATTGCCGCCTGCGAATTGGTAGGCGGCAATGCAGAAACATCTATCCCATCGGCATGTGCCGTGGAAATGATCCACACCATGTCGTTAATCCATGACGATTTACCGTGCATGGATAACGACGATCTGAGACGTGGAAAGCCAACGAGCCACAAAGTCTATGGCGAGGACGTGGCTGTCCTTGCTGGAGATGCGTTGCTATCGTTGGCTTTTGAACACGTGGCCGTGTCAACTGAAGGGGTCCCACCTGAGAGAGTTGTTAGAGCAATTGCTGAGCTGGCAAAATCGGTTGGAAAAGAAGGACTTGTTGCTGGACAGATTGTTGATTTAGAATCTGAAAGTTTATCGAATGTTGATTTAGCGAGACTCGAGTTCATTCATCTGCGTAAAACCGCGGCTTTACTCGAAGCCGCGGTTGTTATGGGAGCAATAGTTGGTGGTGGAAGTGAAGATGAAATTGAGATTTTGAGAAAATTTGCTAGGTGTATTGGTTTGTTGTTTCAGGTTGTTGATGACATTCTTGATGTTACAAAATCTTCTCAAGAATTGGGGAAAACTGCAGGGAAGGATTTGGTTGCTGATAAAGTTACATATCCTAAGCTTTTGGGATTGGAAAAATCAAAGGAGTTTGCTGAAAAATTGGTTAAAGATGCACATGATTGTCTTGTTGGTTTTGATTTTGATAAGAGTGCTCCTTTGCTTGCTTTAACTAATTATATTGCTTATAGGCAGAATTAG 1110 0.4108 MSSIIVNTWVTPNSLLRQTITTKNQTLIPFLAIPISSITNQQRRGNLVTSFSSSKIYGVQTSADKEIEIEEKVSNFDFNVYMLEKANIVNKALDESIVLQEPVKIHEAMRYSLLASGKRVRPILCIAACELVGGNAETSIPSACAVEMIHTMSLIHDDLPCMDNDDLRRGKPTSHKVYGEDVAVLAGDALLSLAFEHVAVSTEGVPPERVVRAIAELAKSVGKEGLVAGQIVDLESESLSNVDLARLEFIHLRKTAALLEAAVVMGAIVGGGSEDEIEILRKFARCIGLLFQVVDDILDVTKSSQELGKTAGKDLVADKVTYPKLLGLEKSKEFAEKLVKDAHDCLVGFDFDKSAPLLALTNYIAYRQN 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g06937 369 Gene3D Farnesyl Diphosphate Synthase 70 369 IPR008949 -
Vifa1g06937 369 Pfam Polyprenyl synthetase 105 336 IPR000092 GO:0008299
Vifa1g06937 369 SUPERFAMILY Terpenoid synthases 81 345 IPR008949 -
Vifa1g06937 369 SFLD Isoprenoid Synthase Type I 82 367 - -
Vifa1g06937 369 CDD Trans_IPPS_HT 105 367 IPR000092 GO:0008299
Vifa1g06937 369 FunFam Geranylgeranyl diphosphate synthase 75 369 - -
Vifa1g06937 369 ProSitePatterns Polyprenyl synthases signature 1. 154 170 IPR033749 -
Vifa1g06937 369 ProSitePatterns Polyprenyl synthases signature 2. 287 299 IPR033749 -
Vifa1g06937 369 PANTHER FARNESYL DIPHOSPHATE SYNTHASE 47 369 - -
Vifa1g06937 369 SFLD Polyprenyl Transferase Like 82 367 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g06937 Vifa-Chr1 1070958908 1070960017 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g06937 K13789 - gmx:100778289 486.108
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g06937 1 1070958908 1070960017 Vifa1g06937 1 1070958908 1070960017 ECH
Vifa4g02495 4 752492632 752493747 Vifa1g06937 1 1070958908 1070960017 ECH
Vifa1g06937 1 1070958908 1070960017 Vifa4g02495 4 752492632 752493747 PCT