Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g02483 ATGACTATGGATCATGGTTACAACGATGAAGACCACCCGAACACGTTCAACAAATATGCTCTTTGTTGTGCCATTGTTGCTTCAATGGTTTCCATCGTTTCTGGCTACGATACCGGTGTTATGAGTGGAGCATTGATATTCATAAGAGAGGACTTGGGAATCAGCGACACACAACAAGAGATTATAGCAGGAATCTTAAACGTGTGTGCATTAGTAGGATCTTTAACAGCTGGAAGAACTTCGGATTACATTGGTCGTCGATACACGATTTTCTTGGCCTCTATACTCTTCATGGTCGGTGCAGTTCTAATGGGGTATGGTCCAAATTATGCAGTTTTATTCATTGGAAGATGTGTTTGTGGTTTAGGTGTTGGTTTTGCACTTATGATAGGACCTGTTTATTCAGCCGAAATTTCATCCGCATCATCAAGAGGTTTTTTAAGCTCTTTACCTGAGGTTTGTATTGGTCTCGGAATCTTATTAGGTTACATATCAAATTATATTTTGGGACGACATTTGAGTTTGAAACTTGGTTGGAGAATAATGCTTGGTATTGCAGCAATCCCTTCAGTTATAGTAGCTTTTTGTATTTTAGCAATGCCAGAATCACCGAGGTGGTTGGTTATGCAAGGTCAACTAGGAAAAGCTAAAAAAGTTTTATTACAAGTTTCAAATACAACACAAGAAGCTGAACATCGTTTCAAGGATATTAAAATTGCAGCTGGTTTAGATGAGAATTGCAACGATGAAATTGTGAAACCTCAAAATTCTAGCCAAGGTCAAGGGGTTTGGAAAGAATTGATTCTAAGACCAACACCTCCTGTACGTAGGATGTTAATTGCTGCTGTTGGAATTCACTTTTTTGAACATGCAACTGGAATTGAAGCTGTTATGTTATATAGTCCAAGAATTTTTAAGAAAGCTGGTGTTATAAGTAAAGATAGGCTTTTACTTGCAACTATTGGTGTGGGAATAACAAAGGTTTCTTTTCTTTTAGTTGCTTTGTTTTTGCTTGACAAAGTAGGTAGAAGAAGATTATTGCAAGTAAGTGTTGGAGGAATGATTGTCGCGCTTACAGTATTGGGATTTAGCTTGACTACAGTGGATAATTCAAATGAAAAGATTTTGTGGGCTTTGATACTTAGTATTGTAGCAACATATACCTATGTTGCTTTCTTTAATGTTGGGCTTGGGCCTGTGACTTGGGTTTATAGTTCAGAGATATTTCCTTTGAGGTTGAGGGCACAAGGAGCAAGTATTGGAGTTGCTGTGAATAGGTCTATCAATGCTCTTGTTTCAATGACTTTTATTTCTATTTATAAAGCAATCACAATAGGTGGTAGTTTTTTCATGTTTGCTGGTATGTCTGTAATAGCTTGGTTTTTTTTCTATTTTTTCCTTCCTGAAACTAAGGGTAAGGCCTTAGAGGAAATGGAGATGCTTTTCACCAAAAAATCAAAAGAGAAAAATGTAGCAATGGTTACTGATTCAACACACAATGTCTAA 1506 0.3699 MTMDHGYNDEDHPNTFNKYALCCAIVASMVSIVSGYDTGVMSGALIFIREDLGISDTQQEIIAGILNVCALVGSLTAGRTSDYIGRRYTIFLASILFMVGAVLMGYGPNYAVLFIGRCVCGLGVGFALMIGPVYSAEISSASSRGFLSSLPEVCIGLGILLGYISNYILGRHLSLKLGWRIMLGIAAIPSVIVAFCILAMPESPRWLVMQGQLGKAKKVLLQVSNTTQEAEHRFKDIKIAAGLDENCNDEIVKPQNSSQGQGVWKELILRPTPPVRRMLIAAVGIHFFEHATGIEAVMLYSPRIFKKAGVISKDRLLLATIGVGITKVSFLLVALFLLDKVGRRRLLQVSVGGMIVALTVLGFSLTTVDNSNEKILWALILSIVATYTYVAFFNVGLGPVTWVYSSEIFPLRLRAQGASIGVAVNRSINALVSMTFISIYKAITIGGSFFMFAGMSVIAWFFFYFFLPETKGKALEEMEMLFTKKSKEKNVAMVTDSTHNV 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g02483 501 SUPERFAMILY MFS general substrate transporter 9 479 IPR036259 -
Vifa4g02483 501 ProSitePatterns Sugar transport proteins signature 1. 77 94 IPR005829 GO:0016020|GO:0022857|GO:0055085
Vifa4g02483 501 PRINTS Sugar transporter signature 289 299 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vifa4g02483 501 PRINTS Sugar transporter signature 383 404 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vifa4g02483 501 PRINTS Sugar transporter signature 114 133 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vifa4g02483 501 PRINTS Sugar transporter signature 406 418 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vifa4g02483 501 PRINTS Sugar transporter signature 31 41 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vifa4g02483 501 Pfam Sugar (and other) transporter 23 482 IPR005828 GO:0016020|GO:0022857|GO:0055085
Vifa4g02483 501 Gene3D MFS general substrate transporter like domains 13 487 IPR036259 -
Vifa4g02483 501 FunFam probable polyol transporter 4 13 485 - -
Vifa4g02483 501 ProSiteProfiles Major facilitator superfamily (MFS) profile. 23 471 IPR020846 GO:0022857
Vifa4g02483 501 NCBIfam sugar porter family MFS transporter 19 478 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vifa4g02483 501 ProSitePatterns Sugar transport proteins signature 2. 119 144 IPR005829 GO:0016020|GO:0022857|GO:0055085
Vifa4g02483 501 ProSitePatterns Sugar transport proteins signature 1. 334 350 IPR005829 GO:0016020|GO:0022857|GO:0055085
Vifa4g02483 501 PANTHER PROTON MYO-INOSITOL COTRANSPORTER 17 489 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g02483 Vifa-Chr4 747919269 747920935 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g02483 11 488 Organic Solute Cotransporters AT4G36670 65.344 0.0 666
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g02483 - - lja:Lj4g3v0937740.1 763.066
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g02483 4 747919269 747920935 Vifa4g02483 4 747919269 747920935 ECH
Vifa4g02483 4 747919269 747920935 Vifa1g06899 1 1063301831 1063305249 PCT