Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g06899 ATGTCTATGGAAAAAGAAACAAATGGGAATGGAAATGGAAATTCTTTTCTCAACAAACATGCTTGTGCTTGCGTTTTGGCTGCTACTATCATCTCTGCAATATTTGGTTATATTACAGGAGTTATGGCTGGGGCACTCTTATTCATAAAGGAAGAACTTGGAATCAGTGACATGCAAGTGCAACTTCTAGCAGGAATCTTAAATGTGTGTGCATTACCTGCATGCATGGTAGCTGGAAGGACATCCGATTACATAGGTCGACGCTACACCATCATTTTATCCGCCATAATCTTCTTCTTAGGCTCAATCTTAATGGGGTATGGGCCAAATTTTCCAATCTTAATGATTGGAAGATGCATTGCAGGATTCGGTGTAGGGTTTGCACTTATTATAACACCAGTTTATAGTGCAGAAATTTCATCTCCTTCTTATAGAGGCTTTTTAACTTCTCTCCCTGATGTTTCCATCAACGCAGGTTTTTTATTTGCTATAGTTGAAAGTTCTAAACTAGGAGAAGAACCATTATGGGCCATAGTTTTTATTGTTGTTGTTATGTACGTTTTGGTGGCTTTTGTTGCAATTGGAATTGGACCTGTGACATGGGTTTATAGCTCTGAGATATTTCCACTAAGGTTGAGAGCACAAGGTTTAGGGGTTTGTGTGGCTGTGAATAGAGTTACAAATGTGGCAGTGGTTACAAGTTTTATTTCAATTTATAAGACCATAACATTAGGTGGAACTTTCTTTATGCTTGTGGGGATTAATGCTTTGGCTTGGTGGTTTTACTATTCTTTCTTGCCTGAAACTAAGGGAAGATCATTAGAAGATATGGAGACTATCTTTGGGAAAGATTCTAAGTGTGAGGTGCAAATGAAATTTGGAAGCAACAATGCATAG 897 0.3813 MSMEKETNGNGNGNSFLNKHACACVLAATIISAIFGYITGVMAGALLFIKEELGISDMQVQLLAGILNVCALPACMVAGRTSDYIGRRYTIILSAIIFFLGSILMGYGPNFPILMIGRCIAGFGVGFALIITPVYSAEISSPSYRGFLTSLPDVSINAGFLFAIVESSKLGEEPLWAIVFIVVVMYVLVAFVAIGIGPVTWVYSSEIFPLRLRAQGLGVCVAVNRVTNVAVVTSFISIYKTITLGGTFFMLVGINALAWWFYYSFLPETKGRSLEDMETIFGKDSKCEVQMKFGSNNA 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g06899 298 PANTHER PROTON MYO-INOSITOL COTRANSPORTER 11 164 - -
Vifa1g06899 298 Pfam Sugar (and other) transporter 176 281 IPR005828 GO:0016020|GO:0022857|GO:0055085
Vifa1g06899 298 Pfam Sugar (and other) transporter 25 165 IPR005828 GO:0016020|GO:0022857|GO:0055085
Vifa1g06899 298 PRINTS Sugar transporter signature 249 259 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vifa1g06899 298 PRINTS Sugar transporter signature 115 134 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vifa1g06899 298 PRINTS Sugar transporter signature 32 42 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vifa1g06899 298 ProSitePatterns Sugar transport proteins signature 1. 78 95 IPR005829 GO:0016020|GO:0022857|GO:0055085
Vifa1g06899 298 SUPERFAMILY MFS general substrate transporter 25 192 IPR036259 -
Vifa1g06899 298 ProSitePatterns Sugar transport proteins signature 2. 120 145 IPR005829 GO:0016020|GO:0022857|GO:0055085
Vifa1g06899 298 SUPERFAMILY MFS general substrate transporter 179 278 IPR036259 -
Vifa1g06899 298 Gene3D MFS general substrate transporter like domains 177 271 IPR036259 -
Vifa1g06899 298 ProSiteProfiles Major facilitator superfamily (MFS) profile. 24 298 IPR020846 GO:0022857
Vifa1g06899 298 Gene3D MFS general substrate transporter like domains 16 176 IPR036259 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g06899 Vifa-Chr1 1063301831 1063305249 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g06899 176 281 Organic Solute Cotransporters AT2G18480 58.491 2.50e-36 134
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g06899 - - gmx:100786322 255.373
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g02483 4 747919269 747920935 Vifa1g06899 1 1063301831 1063305249 PCT