LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vifa4g01810	ATGTGTTTTGAATTTCCCAACTTGCAGTTTCTGGTTTTTGCATGCTCAGACTCAAGAGTTTGTCCATCCCATATTTTGGATTTTCAACCTGGTGAAGCCTTTGTTGTTCGAAACATTGCCAACATGGTTCCACCATATGACAAGACCAAACATTCAGGAACTGGAGCTGCCATTGAATATGCCGTCATACATTTAAAAGTGGAGAATATTGTTGTTATTGGACACAGCTGTTGTGGAGGTATAAAGGGCCTCATGTCCATCCCAGATGATGGGACCATTGCAAGCGACTTCATAGAACATTGGGTCCAAATTTGTAGTGCAGCAAAGTACAAAGTTAAAGTAGAAGCAAGTGAATTAGATTTCTCTGAGCAGTGTACCAACTTGGAGAAGGAAGCTGTTAATGTGTCTCTTGGGAATTTACTGACTTATCCATTTGTGAGAGAAGCAGTTGTGAAGAAAACAGTGGCTTTAAAAGGTGCACATTATGATTTTGTTAAGGGAGGACTTGAGCTTTGGGATATAAACTTCAAAGTTTCATCCTCGCTGTCCTTTTAA	555	0.4	MCFEFPNLQFLVFACSDSRVCPSHILDFQPGEAFVVRNIANMVPPYDKTKHSGTGAAIEYAVIHLKVENIVVIGHSCCGGIKGLMSIPDDGTIASDFIEHWVQICSAAKYKVKVEASELDFSEQCTNLEKEAVNVSLGNLLTYPFVREAVVKKTVALKGAHYDFVKGGLELWDINFKVSSSLSF	184

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vifa4g01810	184	SMART	Pro_CA_2	3	173	IPR001765	GO:0004089\|GO:0008270
	Vifa4g01810	184	SUPERFAMILY	beta-carbonic anhydrase, cab	6	178	IPR036874	GO:0004089\|GO:0008270
	Vifa4g01810	184	FunFam	Carbonic anhydrase	5	181	-	-
	Vifa4g01810	184	Gene3D	Carbonic anhydrase	5	184	IPR036874	GO:0004089\|GO:0008270
	Vifa4g01810	184	Pfam	Carbonic anhydrase	11	167	IPR001765	GO:0004089\|GO:0008270
	Vifa4g01810	184	ProSitePatterns	Prokaryotic-type carbonic anhydrases signature 1.	15	22	IPR015892	GO:0004089\|GO:0008270\|GO:0015976
	Vifa4g01810	184	ProSitePatterns	Prokaryotic-type carbonic anhydrases signature 2.	59	79	IPR015892	GO:0004089\|GO:0008270\|GO:0015976
	Vifa4g01810	184	PANTHER	CARBONIC ANHYDRASE	9	175	IPR001765	GO:0004089\|GO:0008270
	Vifa4g01810	184	CDD	beta_CA_cladeB	10	172	IPR045066	GO:0004089\|GO:0008270

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vifa4g01810	Vifa-Chr4	513824461	513825627	Dispersed

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vifa4g01810	K01673		-	gmx:100795969	313.153

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Vifa1g04654	1	728326014	728329445	Vifa4g01810	4	513824461	513825627	PCT