Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g04654 ATGGCTGCAGAATCATACGACGAAACCATCGCATCGCTGACCAAGCTTCTCCAGGAGAAAGCTGAGCTAGGCAGCATCGCGGCCGTTAGGATCAGGGAGCTCACGGCGGAGTTAGAGGCAACCGCTGCAAAACCGTTTAATCCGGATGAGAGGATTCGATCCGGCTTCGTTCAATTCAAAACTGAGAAATTCGAAAAAAATCCTGATCTGTACAGTGAACTTGCCAAAGGTCAGAGTCCAAAGTTTATGGTGTTTGCTTGCTCAGATTCAAGGGTTTGTCCTTCCCACATTTTGGATTTCCAACCAGGTGAAGCTTTTGTGGTCAGAAACATCGCCAACATGGTTCCACCATATGACAAGACCAAGTATTCGGGAGCAGGGGCGGCCATTGAATATGCTATACTACATTTAAAGGTGGAGAATATTGTAGTAATTGGACACAGCTGCTGTGGAGGTATCAAGGGTCTCATGTCTATCCCAGATGATGGCACCATCGCAAGTGACTTTATAGAAAATTGGGTCCAAATATGTAATCCAGCAAAGTCCAAGATTAAAACAGATACAAGCAGCTTAAGCTTCGCAGAGCAGTGTACAAACTGTGAAAAGGAAGCTGTGAATGTATCTCTTGGAAACTTATTGACCTATTCATTTGTGAGAGAAGCTGTTCTGAAGAAAACACTTGCTTTGAAAGGAGCACATTACAATTTTGTTAATGGCACTTTTGAGCTGTGGGATTTGAACTACAATGTTTTGCCCTCTCTGGCCGTTTAA 771 0.4397 MAAESYDETIASLTKLLQEKAELGSIAAVRIRELTAELEATAAKPFNPDERIRSGFVQFKTEKFEKNPDLYSELAKGQSPKFMVFACSDSRVCPSHILDFQPGEAFVVRNIANMVPPYDKTKYSGAGAAIEYAILHLKVENIVVIGHSCCGGIKGLMSIPDDGTIASDFIENWVQICNPAKSKIKTDTSSLSFAEQCTNCEKEAVNVSLGNLLTYSFVREAVLKKTLALKGAHYNFVNGTFELWDLNYNVLPSLAV 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g04654 256 FunFam Carbonic anhydrase 37 256 - -
Vifa1g04654 256 Pfam Carbonic anhydrase 83 240 IPR001765 GO:0004089|GO:0008270
Vifa1g04654 256 SMART Pro_CA_2 75 245 IPR001765 GO:0004089|GO:0008270
Vifa1g04654 256 CDD beta_CA_cladeB 55 244 IPR045066 GO:0004089|GO:0008270
Vifa1g04654 256 SUPERFAMILY beta-carbonic anhydrase, cab 39 252 IPR036874 GO:0004089|GO:0008270
Vifa1g04654 256 ProSitePatterns Prokaryotic-type carbonic anhydrases signature 1. 87 94 IPR015892 GO:0004089|GO:0008270|GO:0015976
Vifa1g04654 256 ProSitePatterns Prokaryotic-type carbonic anhydrases signature 2. 131 151 IPR015892 GO:0004089|GO:0008270|GO:0015976
Vifa1g04654 256 Gene3D Carbonic anhydrase 40 256 IPR036874 GO:0004089|GO:0008270
Vifa1g04654 256 PANTHER CARBONIC ANHYDRASE 40 248 IPR001765 GO:0004089|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g04654 Vifa-Chr1 728326014 728329445 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g04654 K01673 - gmx:100803945 439.884
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g04654 1 728326014 728329445 Vifa1g04654 1 728326014 728329445 ECH
Vifa1g04654 1 728326014 728329445 Vifa4g01810 4 513824461 513825627 PCT